Baudline is a time-frequency browser designed for scientific visualization of the spectral domain. Signal analysis is performed by Fourier, correlation, and raster transforms that create colorful spectrograms with vibrant detail. Conduct test and measurement experiments with the built in function generator, or play back audio files with a multitude of effects and filters. The baudline signal analyzer combines fast digital signal processing, versatile high speed displays, and continuous capture tools for hunting down and studying elusive signal characteristics.
BRL-CAD is a powerful constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing support for rendering and geometric analysis, path-tracing for realistic image synthesis, network distributed framebuffer support, and image and signal-processing tools.
Cactus is a general, modular, parallel environment for solving systems of partial differential equations. The code has been developed over many years by a large international collaboration of numerical relativity and computational science research groups and can be used to provide a portable platform for solving any system of partial differential equations.
DINO is a realtime visualization program for structural biology data, including protein and nucleic-acid coordinates, molecular surfaces, electrostatic potentials, electron densities, surface topographs (from AFM), and MD trajectories. It supports PNG, PostScript and POVray (3.1g and megapov) output. Supported platforms are Linux/i386, Linux/PPC, IRIX, Sun, OSF1, and MacOS X.
EGO is a program to perform molecular dynamics simulations on parallel as well as on sequential computers. Supported parallel machines include the Hitachi SR8000, CRAY-T3E, IBM-SP2, Fujitsu VPP700, Parsytec-CC under PARIX, and inhomogeneous clusters of UNIX workstations under PVM or MPI. EGO also runs sequentially on any decent UNIX workstation, even Windows95/NT PC's (with a GNU-C compiler) can be used.
EtherApe is a GNOME/pcap-based etherman, interman, and "tcpman" clone. It displays network activity graphically. Active hosts are shown as circles of varying size, and traffic among them is shown as lines of varying width. It supports Ethernet, FDDI, Token Ring, ISDN, PPP, WLAN, and SLIP transports. It knows about VLANs, IP, IPv6, TCP, UDP, FTP, and a number of other protocols. Additional statistics windows will let you concentrate on protocols or nodes.
Genius is an arbitrary precision integer and multiple precision floating point calculator. It includes its own programming language similar in some aspects to C, bc, or Pascal. It can deal with rational numbers and complex numbers. It has matrix support as well. It uses the gmp library so it is very fast for calculations of large numbers. It has a command line and a GNOME interface. The GNOME interface supports plotting functions and 3D surfaces.
Ghemical is a molecular modelling software package with some nice 3D visualization tools. It supports methods based on both molecular mechanics and quantum mechanics (using MOPAC7, and MPQC for QM). The geometry optimization (for MM and QM) and molecular dynamics (for MM) algorithms are included. Ghemical is written in C++, and hopefully offers a good framework for a generic freeware molecular modelling tool.