LibBi is used for state-space modelling and Bayesian inference on high-performance computer hardware, including multi-core CPUs, many-core GPUs (graphics processing units), and distributed-memory clusters. The staple methods of LibBi are based on sequential Monte Carlo (SMC), also known as particle filtering. These methods include particle Markov chain Monte Carlo (PMCMC) and SMC2. Other methods include the extended Kalman filter and some parameter optimization routines. LibBi consists of a C++ template library and a parser and compiler, written in Perl, for its own modelling language.
REMITT Electronic Medical Information Translation and Transmission is a standalone electronic medical billing solution. It works independent of any specific electronic medical record (EMR) or practice management (PM) system, and can interface with any EMR or PM system that implements its API. The first system to do so is FreeMED.
Warewulf is an operating system management toolkit designed to facilitate large scale deployments of homogeneous and heterogeneous systems on physical, virtual and cloud based infrastructures. Originally, the Warewulf project pioneered the concept of stateless computing in HPC, setting the standard for large-scale cluster provisioning. It provided two functions, provisioning and monitoring but the two functions did not communicate within Warewulf itself, nor was it possible to hook other functions directly into Warewulf itself. Today, Warewulf is more than just a basic provisioning and monitoring solution as it now implements an abstract, object-oriented data store and a modular interface that facilitates a highly extensible, customizable feature set. Current and planned modules include monitoring (operating system, services, filesystems, etc.), provisioning, power management, user management, configuration management, event/trigger handling and notification, scheduler integration, cloud services (both local and remote), etc.
GPLIGC is a program for analyzing IGC flight data from GNSS flight data recorders used by glider pilots. It uses Perl/Tk and gnuplot. The openGLIGCexplorer (written in C++) allows one to view the data in 3D with OpenGL, and can also be used as a digital elevation model terrain viewer. It can also be used for off-screen rendering of 2D and 3D images of flight tracks or terrain/map data.
The Bioinformatics Benchmark System is an attempt to build a reasonable testing framework, tests, and data, to enable end users and vendors to probe the performance of their systems. It is not trying to be the last word in informatics benchmarking, as there are simply too many codes, tests, data sets, and databases. The goal is to create a core of tests that all may download and use to probe specific elements of system performance. The end goal is to enable a pluggable set of tests, including the core tests, so that performance data may be gathered.
Berkeley DB XML is a native XML database engine for use within your product. Made available as a C++ library with language bindings for Java, Perl, Python, PHP, and Tcl, it integrates directly into your application (it is not a standalone database server). It provides XQuery access into a database of document containers. XML documents are stored and indexed in their native format using Berkeley DB as the transactional database engine.
Stager is a system for aggregating and presenting network statistics. Though tailored for using NetFlow data from the flow-tools package, it is generic and can be customized to present and process any kind of network statistics. The backend collects data with flow-tools and stores reports in a database, automatically handling the aggregation of hourly statistics into days, weeks, and months. The Web frontend presents data in tables, matrices, or plots. The reports are fully customizable, and their definitions are stored in the database.
The Experimental Physics and Industrial Control System is a set of software tools, libraries, and applications developed collaboratively and used worldwide to create distributed soft real-time control systems for scientific instruments such as a particle accelerators, telescopes, and other large scientific experiments.
Visual Paradigm for UML is a Unified Modeling Language (UML) design tool that supports all UML diagrams, SysML diagrams, and entity relationship diagrams. Visual Paradigm for UML provides extensive use case modeling features, including full function UML use case diagram, flow of events editor, use case/actor grid, and activity diagram generation. Visual Paradigm for UML produces system documentation in PDF, HTML, and MS Word formats. A developer can design system documentation with the template designer. A system analyst can estimate the consequences of changes with impact analysis diagrams, such as matrix and analysis diagram. Visual Paradigm for UML generates Java code.
PasTmon (Passive Application Response Time Monitor) passively monitors your application servers, measuring and reporting user response times, throughput and congestion. It currently works with HTTP, telnet, rlogin, rsh, FTP (control channel), SMTP, POP3, and IRC. Measurements are recorded in a PostgreSQL database and are presented graphically via a PHP Web front-end using R statistical analysis scripts to create the plots.