Gwyddion is a modular SPM (Scanning Probe Microsope) data visualization and analysis tool. It can be used for all most frequently used data processing operations including: leveling, false color plotting, shading, filtering, denoising, data editing, integral transforms, grain analysis, profile extraction, fractal analysis, and many more. The program is primarily focused on SPM data analysis (e.g. data obtained from AFM, STM, NSOM, and similar microscopes). However, it can also be used for analyzing SEM (scaning electron microscopy) data or any other 2D data.
Hypercube is a graph visualization tool for drawing DOT (graphviz), GML, GraphML, GXL and simple text-based graph representations as SVG and EPS images. It comes with a Qt-based GUI application and a Qt-independent commandline tool. Hypercube uses a simulated annealing algorithm to lay out the graph, which can be easily parameterized to achieve the desired look.
CodeQuery is a tool for indexing and then querying or searching C, C++, Java, Python, Ruby, and Go source code. It builds upon the databases of cscope and ctags, which are processed by the cqmakedb tool to generate a CodeQuery database file. This can be viewed and queried with a GUI tool. The features include auto-completion of search terms and visualization of function call graphs and class inheritance. The following queries can be made: Symbol, Function or macro, Class or struct, Functions calling this function, Functions called by this function, Class which owns this member or method, Members and methods of this class, Parent of this class (inheritance), Children of this class (inheritance), Files including this file, and Full path for file.
Social Networks Visualizer (SocNetV) is a flexible and user-friendly tool for the analysis and visualization of Social Networks. It lets you construct mathematical graphs with a few clicks on a virtual canvas, load networks of various formats (GraphViz, GraphML, Adjacency, Pajek, UCINET, etc), or create a network by crawling all links in a Web page. The application can compute basic network properties, such as density, diameter, and distances (shortest path lengths), as well as more advanced structural statistics, such as node and network centralities (i.e. closeness, betweenness, graph), clustering coefficient, etc.
The Noble Ape Simulation is a collection of a number of autonomous simulation components including a landscape simulation, biological simulation, weather simulation, sentient creature (Noble Ape) simulation, and a simple intelligent-agent scripting language (ApeScript). Noble Ape also contains a social simulation where the Noble Apes can be tracked in terms of social groups and also over many generations to explain social phenomenon to users looking to study this kind of interaction. It has been in development for more than a fifteen years.