Enzyme is an architecture for creating user-searching-user applications. Right now, it is primarily useful as a resume create/search and HR management system. However, it's potential uses are wide-ranging, and it offers PHP developers an alternative to relying on simple "keyword" searching systems.
GPP is a general-purpose preprocessor with customizable syntax, suitable for a wide range of preprocessing tasks. Its independence from any programming language makes it much more versatile than cpp, while its syntax is lighter and more flexible than that of m4. The syntax is fully customizable, which makes it possible to process text files, HTML, or source code equally efficiently in a variety of languages.
Jmol is a Free, Open Source molecule viewer and editor. It is a collaboratively developed visualization and measurement tool for chemical scientists. Jmol is an active project, and there are new features being added to it on a daily basis. Users are encouraged to modify it to fit their needs and to contribute their changes to the project.