Visualization of Protein Ligand Graphs (VPLG) uses a graph-based model to describe the structure of proteins on the super-secondary structure level. A protein-ligand graph is computed from the atomic coordinates in a PDB file and the secondary structure assignments of the DSSP algorithm. In this graph, vertices represent secondary structure elements (SSEs, usually alpha helices and beta strands) or ligand molecules, while the edges model contacts and relative orientations between them. The graphs can be visualized, written to a database, and saved in a text-based file format.
OpenChrom provides mass spectrometric analysis of chromatographic data, in a way similar to ChemStation from Agilent Technologies. It handles data files from different LC/MS, GC/MS systems and vendors, such as (*.D) chromatograms from Agilent Technologies, Finnigan ITS40 (*.ms), NetCDF (*.cdf), MzXML (*.mzxml), and other formats. It is flexible and can be extended by plugins.
Beat Back the Horde is a rhythm-time strategy game for Android 2.2 and up, focusing on fast-paced placing of units while tapping to the beat! Build up combos to spawn Über Units! It is playable in single-player mode, or in multi-player mode over Bluetooth, and can be learned in a minute and played for hours. It includes many achievements to unlock, five songs to master, adjustable difficulty single-player AI, and particle effects.
AntTask-GenerateXML is an Ant task that uses XMLBeans to create example XML instances from a W3C schema. It is especially useful for looking at pieces of schema, as you can set the element you wish to use as the root one. It will use the values from enumerations as the fixed/default values for attributes and elements if they are set. It obeys the XML type system with the exception of regex/patterns.
JagPDF is a library for generating PDF documents in C/C++, Python, and Java. It supports TrueType (subsetting) and standard 14 Type 1 fonts, font metrics, Unicode, UTF-8 and common 8-bit character encodings, images (JPEG, PNG, or custom), paths, color spaces (RGB, CMYK, CIE based, ICC profiles, indexed), encryption, bookmarks, hyperlinks, and more.
Paragent is a Web-based tool for IT administrators that provides a unified service for hardware and software inventory, alerting, remote desktop, and help desk functions. It delivers these tools in an easy-to-use interface, with one-click access and site-wide built-in advanced search capabilities. It is a combination of applications, including Lisp-based servers collecting data, C++ agents on the client machines, and Java tools for the remote desktop component. Paragent runs on Linux servers and supports Windows clients.
Computation Job Management (jobman) is a program that calls executables according to a given program flow. Each executable is run in a separate process. It is useful when a project needs to carry out a series of calculations that are performed by software written in different languages or supplied by third parties, but invoking individual programs manually is error prone and hard to manage. The various individual programs don't communicate with each other except via persistent storage. This is especially the case for some scientific computing, quantitative finance, and prototyped programming.