XWiki is a WikiWiki clone written in Java that supports many popular features of other Wikis like the Wiki syntax, version control, attachments, security, and searching, but also many advanced features like templates, database and dynamic development using scripting languages (Velocity, Groovy, Ruby, Python, PHP, and more), an extension system and skinability, J2EE scalability, an XML/RPC remote API, statistics, RSS feeds, PDF exporting, WYSIWYG editing, an Office viewer and importer, and a lot more.
PhenoTips is a tool for collecting and analyzing phenotypic information for patients with genetic disorders. It combines an easy-to-use interface, compatible with any device which runs a Web browser, with a standardized database backend. The PhenoTips user interface closely mirrors clinician workflows, to facilitate the recording of observations made during the patient encounter. By collecting, classifying, and analyzing phenotypic information during the patient encounter, PhenoTips allows streamlining of clinic workflow, efficient data entry, improved diagnosis, standardization of collected patient phenotypes, and sharing of anonymized patient phenotype data for the study of rare disorders.
LogicalDOC is a Web-based document management system that is easy to use and learn. Its architecture leverages best-of-breed Java technology to achieve a powerful and flexible solution. It supports its users with a powerful search engine (Lucene), Web service interface (JAX-WS via CXF) compatible with .NET and PHP, versioning, annotation on documents, a WebDAV interface, importing and exporting from .zip files. Documents can be organized into hierarchical folders, searched using the integrated search engine, or browsed by Tag. The system is extensible thanks to the technologies used (Spring-Hibernate) and its plugin architecture.
eXist is a native XML database featuring efficient, index-based XQuery processing. It provides a complete ecosystem for building applications entirely based on XML, XQuery, and related standards. The high-performance XML database engine stores textual or binary data and documents without requiring a database schema. Using XML across all layers makes mapping technologies superfluous and increases productivity. A browser-based IDE and a standardized application packaging system help developers get started quickly.
Piggydb is a flexible and scalable knowledge building platform that supports a heuristic or bottom-up approach to discover new concepts or ideas based on your input. You can begin with using it as a flexible outliner, diary or notebook, and as your database grows, Piggydb helps you to shape or elaborate your own knowledge. Piggydb is a Web application provided as a self-contained package that contains a Web server and database engine.