Antipodes.Cubes is a BPM system for visual modeling and automation of processes. Processes are designed visually as block diagrams in a graphical environment called WfArchitect. The logic and flow of the processes are reflected in the different containers (blocks or shapes) and the connections between them. It supports task, condition, user decision, code, timer, and scheduler containersm and allows for the inclusion of subprocesses in processes and also recursive use of subprocesses.
BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.
Bloof is an infrastructure for analytical processing of version control data. Its main application, the Bloof Browser, provides detailed visualizations of the evolution of software projects. Bloof uses version control data for analyzing the evolution of software projects. Bloof is designed to be integrated into other applications, providing a Java API access interface and an XML output format. Other Tools for Bloof are: Bloof Shell, Bloof Script, and Bloof Metric SDK.
CONSIDEO MODELER allows you to mindmap a complex problem, analyse it qualitatively to discover levers and bottlenecks, and even to simulate it by automatically building a system dynamics model. One can integrate any external data and setup a customized management cockpit for playing out scenarios. It is useful for organizational problems, project management, financial analysis, production processes, score cards, and much more.
Cell Electrophysiology Simulation Environment is a framework to perform electrophysiological simulations. It can, for example, simulate cardiac myocyte electrical activity. It is useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
The Chemistry Development Kit (CDK) is a library of Java classes for chemo-, bioinformatics, computational chemistry, and chemometrics. It provides important algorithms like substructure search, SMILES, Gasteiger charges, QSAR descriptor calculation, 3D structure generation, 2D layout and rendering, many IO formats, atom typing, and more.