Osgish is a command line shell for OSGi. It is based on the Readline Library, Jmx4Perl, as the OSGi backend, and Aries JMX as the OSGi Management layer. It is different than other OSGi shells, as it is implemented in pure Perl and provides unique features like wildcard support, context-sensitive command line completion, syntax highlighting, bulk lifecycle operations, advanced query facilities, and remoting via HTTP. It uses jmx4perl and Aries JMX OSGi bundles for accessing the OSGi container remotely.
Ametys is a powerful Web CMS used by many institutions of higher education and government, but also industries and SMEs. It is known for its ergonomic design which promotes ease of use, its social Web functionality, and the ability to manage a large number of users. It makes content publishing accessible for the non-programmer and provides an easy editorial interface very similar to Microsoft Office applications.
Jmx4Perl provides an alternate way of accessing Java JEE Server management interfaces that are based on JMX (Java Management Extensions). It is an agent-based approach where a small Web application deployed on the application server provides HTTP/JSON-based access to JMX MBeans registered within the application server. It is set up from a handful of Perl modules, which can be integrated seamlessly in your own programs. It also includes a Nagios plugin, check_jmx4perl, a jmx4perl command line tool for remote JMX queries and operations, and a readline-based JMX shell j4psh, with context sensitive command completion and syntax highlighting.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
VisIt is an interactive parallel visualization and graphical analysis tool for viewing scientific data. Users can quickly generate visualizations from their data, animate them through time, manipulate them, and save the resulting images for presentations. VisIt contains a rich set of visualization features so that you can view your data in a variety of ways. It can be used to visualize scalar and vector fields defined on two- and three-dimensional (2D and 3D) structured and unstructured meshes. It was designed to interactively handle very large data set sizes in the terascale range, and works well down to small data sets in the kilobyte range.
libGlass is a scalable set of components that can be used by applications to perform distributed computing. Applications are built by reusing the available components as needed. One of the major goals of Glass is to be a user-friendly framework, not only suitable for new applications, but also for legacy code. This is an important feature, as most available solutions for distributed computing require a substantial amount of rewrite of legacy code.
Doodle is a desktop search engine for Linux. It searches your hard drive for files using pattern matching on meta-data. It extracts file-format specific meta-data using libextractor and builds a suffix tree to index the files. The index can then be searched rapidly. It is similar to locate, but can take advantage of information such as ID3 tags. It is possible to do full-text indexing using the appropriate libextractor plugins. It also supports using FAM to keep the database up-to-date.
Magnolia is a CMS which delivers smartphone simplicity on an enterprise scale. The mobile-inspired HTML5 user interface works through customisable, task-focused Apps, a notification stream called the Pulse, and a system of Favorites for quickly accessing the workspace. Magnolia allows organizations to orchestrate online services, sales, and marketing across all digital channels, maximizing the impact of every touchpoint. Magnolia’s Open Source technology, support of open standards such as CMIS and JCR, and integration with the Spring Framework enable developers to unlock backend systems and third-party applications. Magnolia is used in more than 100 countries across the world by governments and leading FORTUNE 500 enterprises.