AlgART Libraries is a collection of Java libraries, supporting generalized smart arrays and matrices with elements of any types, including a wide set of of 2D, 3D, and multidimensional image processing and other algorithms. Main features: 64-bit long int indexes, a memory model concept (allowing storing data in different schemes from RAM to mapped disk files), wide usage of lazy evaluations, built-in multi-threading optimization for multi-core processors, etc.
gedcom4j is a Java library for loading (parsing) and saving GEDCOM 5.5 or 5.5.1 files to/from a Java object hierarchy, which can be manipulated by your code as you see fit. Please note that gedcom4j is not an application. It is a library for parsing, manipulating, and writing GEDCOM data in your own programs.
Xtempore is a lightweight, modular, and powerful XML-based domain independent templating language. It's essentially a programming library which provides flexible tools for transforming an object (model) and an XML document (template) into another XML document. Xtempore is implemented in Java and requires JRE 1.5 or later and slf4j for logging.