The POCO C++ Libraries are a collection of class libraries for developing network-centric, portable applications in C++. The classes integrate perfectly with the C++ Standard Library and cover functionality like threads, thread synchronization, filesystem access, streams, shared libraries and class loading, sockets and network protocols (HTTP, FTP, SMTP, etc.), including an HTTP server, as well as an XML parser with SAX2 and DOM interfaces and SQL database access.
libmsntp is a full-featured, compact, portable SNTP library. libmsntp provides SNTP client and server functionality in a shared library with a simple API. SNTP (RFC 2030) is a simplified version of NTP, which allows precise synchronization of system clocks over a best-effort network.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
tzls and tzx are commandline utilities for quickly unpacking or listing the contents of various types of common Unix archive files, which may be compressed in any of several ways. The supported compression types are bzip2, gzip, and compress. The supported archive types are tar, cpio, zip, rar, and arj. The tools are implemented as shell scripts, so no compilation is required.
fff and ffl are tools for searching for files and directories from the Unix shell with more integrated "shell-like" behaviour and simpler syntax than find(1), though find(1) is still used to perform the actual searches. In particular, there is no need to quote wildcards, and searches are case-insensitive. Matching results are shown one per line. fff displays full paths, and ffl relative paths. Detailed find(1) options can be appended to the fff/ffl command line if desired. These utilities are based entirely on shell aliases and functions, so no compliation is required.
PBZIP2 is a parallel implementation of the bzip2 block-sorting file compressor that uses pthreads and achieves near-linear speedup on SMP machines. The output of this version is fully compatible with bzip2 1.0.2 or newer (ie: anything compressed with PBZIP2 can be decompressed with bzip2).