mysqlviz renders a graphical representation of a MySQL database from a mysqldump file. Features include speed, the ability to infer foreign key relationships if you do not have them defined, and handling of partial dumps (i.e. foreign keys to tables that are not defined within the dump).
pycdep is a tool for analyzing and visualizing C/C++ header file dependencies. A script extracts information about your code and dumps it in a Prolog database, which is used to query the dependency graph. It comes with a large number of predefined queries for finding out which files include or depend on which other files, how files depend on another file, circular dependencies, transitively implied dependencies, and design rule checks (limitations on which project can include from which other project). Visualization is supported by dumping graphs to .dot files. It also has the beginnings of a natural language interface.
openPLM is a Web-based Product Lifecycle Management (PLM) application. It provides a configuration management system that manages all kind of files and data as documents in a product structure. It supports documents, parts, BOMs, part-document links, electronic signatures for objects, revision management, check in and check out for all files, plain text search using the Xapian engine, navigation between objects using Graphviz, and user management that allows sponsorship, delegation, and rights. Plug-ins are available for Thunderbird, OpenOffice/LibreOffice, FreeCAD, and Gedit.