RSS 2 projects tagged "Graph theory"

Download No website Updated 26 Oct 2012 VPLG

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Pop 22.98
Vit 2.01

Visualization of Protein Ligand Graphs (VPLG) uses a graph-based model to describe the structure of proteins on the super-secondary structure level. A protein-ligand graph is computed from the atomic coordinates in a PDB file and the secondary structure assignments of the DSSP algorithm. In this graph, vertices represent secondary structure elements (SSEs, usually alpha helices and beta strands) or ligand molecules, while the edges model contacts and relative orientations between them. The graphs can be visualized, written to a database, and saved in a text-based file format.

Download Website Updated 24 Mar 2014 Hypercube

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Pop 542.07
Vit 16.67

Hypercube is a graph visualization tool for drawing DOT (graphviz), GML, GraphML, GXL and simple text-based graph representations as SVG and EPS images. It comes with a Qt-based GUI application and a Qt-independent commandline tool. Hypercube uses a simulated annealing algorithm to lay out the graph, which can be easily parameterized to achieve the desired look.

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GNU Wget

A network utility for downloading content from the Web.

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TXR

A data munging language.