libalinga is a C++ implementation of a multi-stream codec for the ALingA (Aligned Linguistic Annotation) format. It makes use of libogg++. Each ALingA stream holds at least one stream of annotation data, which is in the LingA format. It may also interleave the signal stream(s) against which the LingA streams are aligned, or it may simply reference such streams. It also provides metadata about the underlying manifold for the signals and the annotations. The metadata is ordered for runtime parsing of the number and type of signal and LingA codecs to enable decoding of the multiple logical streams in one pass.
libalinga-java is a Java native interface to libalinga. It provides C++ and Java wrappers, as well as Java classes. It also provides control files to generate them from the libalinga interface using the program swig. The major and minor versions of this JNI will track that of libalinga, but its bugfixes are independent of libalinga bugfixes.
libneuro-java is a Java native interface to libneuro. It provides C++ and Java wrappers, as well as Java classes. It also provides control files to generate them from the libneuro interface using the program swig. The major and minor versions of this JNI will track that of libneuro, but its bugfixes are independent of libneuro bugfixes.
Moab Workload Manager is a High Performance Computing (HPC) resource management and job scheduler. It is designed and developed by the same developers as the popular Maui Scheduler, and it provides the same powerful cluster scheduling capabilities with the addition of events, resources, and grid policy engines.
se is a screen-oriented version of the classic UNIX text editor ed. The editor implements many of the commands of ed, but instead of being line-oriented, se is screen-oriented. The command syntax is very familiar to users who already know ed. If you get stuck, there is a built-in help system that describes many of the available commands. Many configurable options can be loaded from a .serc file. se can be run interactively or in a script via the included scriptse utility. The editor is portable across many platforms, supporting major Linux and BSD distributions as well as other systems like GNU, Minix, Haiku, OpenSolaris, and Cygwin.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.