libogg++java is a Java native interface to libogg++. It provides C++ and Java wrappers, as well as Java classes. It also provides control files to generate them from the libogg++ interface using SWIG. The major and minor versions of this JNI will track that of libogg++, but its bugfixes are independent of libogg++ bugfixes.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
OMCSNetCPP is a C++ API and inference toolkit for accessing OMCSNet, a semantic network mined out of the Open Mind Common Sense knowledge base. The goal of this project is to provide a class library that allows programmers to easily add common sense reasoning capabilities to C++ applications.