BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.
BRL-CAD is a powerful constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing support for rendering and geometric analysis, path-tracing for realistic image synthesis, network distributed framebuffer support, and image and signal-processing tools.
Coin is an implementation of Open Inventor. Open Inventor is the de facto standard API for retained-mode 3D graphics programming. Open Inventor has a highly extensible design, and has been designed to allow for rapid development of highly interactive 3D graphics applications in the fields of CAD, engineering, scientific computing, simulation, VRML, and visualization.
fsv, the 3D File System Visualizer, allows you to view a collection of directories and files as three-dimensional geometry. It represents all or part of a filesystem as a collection of blocks of varying sizes, each labeled with a filename, and arranged in a manner consistent with the original directory structure. fsv can visualize any arbitrarily large collection of files, limited only by memory and hardware constraints. Program features include an integrated 2D interface, intelligent camera handling, and extensive use of animation. fsv requires OpenGL.
g2 is an easy to use, portable and powerful 2D graphics library. It provides a comprehensive set of functions for simultaneous generation of graphical output on different types of devices. The following devices are currently supported: Postscript, X11, FIG (xfig), PNG, and JPEG using the gd library, and Win32. g2 is written in C (ANSI) and additionally has Fortran, Perl, and Python interfaces.
GtkDatabox is a widget for the GTK+ library designed to display large amounts of numerical data quickly and easily. It allows for one or more data sets of thousands of data points (X and Y coordinates) to be displayed and updated in split seconds. It offers the ability to zoom into and out of the data, and to navigate through your data by scrolling. In addition to rulers and a simple coordinate cross, it allows you to add one (or even more) configurable grids like on an oscilloscope. Data may be presented as dots, lines connecting the data, or vertical bars. The widget allows you to easily transform pixel coordinates into data coordinates, thus allowing you to easily create powerful applications for data analysis.
The GNU Triangulated Surface Library (GTS) provides a set of useful functions to deal with 3D surfaces meshed with interconnected triangles. It features metric operations (area, volume, curvature, etc.), 2D Delaunay and constrained Delaunay triangulations, robust geometric predicates and set operations on surfaces (union, intersection, etc.), surface refinement and coarsening (multiresolution models), and bounding-boxes trees for collision/intersection detection.
Jmol is a Free, Open Source molecule viewer and editor. It is a collaboratively developed visualization and measurement tool for chemical scientists. Jmol is an active project, and there are new features being added to it on a daily basis. Users are encouraged to modify it to fit their needs and to contribute their changes to the project.