This package contains Virtual Hybridization tools. Virtual Hybridization uses sets of short probes to generate datasets for comparative genomics: given a DNA sequence and a set of probes, the typical output will give a sequence of oriented probe hits along the DNA sequence. Other tools are supplied to allow simple manipulations such as format conversion and extraction of permutations.
Pipviewer is a visualizer for multiple alignments of genomic sequences. It highlights conserved regions and allows basic annotations. Its main goal is to find conserved probes for the construction of gene order data sets. Selected regions marked as 'probes' can be exported to fasta format. It can also retrieve gene annotations from the NBCI and display this information along the alignment. Pipviewer is not an aligner. You must compute the alignment with another tool like Clustal or Multi PIP Maker.
Greengrass is a C# framework providing a high-level API for the Resource Description Framework (RDF), allowing RDF triples to be parsed, stored, and manipulated. Greengrass supports serialization and deserialization of CLR types to plain RDF, OWL, and other RDF vocabularies. Greengrass should work with any CLR-complied language, like C#, BOO, IronPython, Nemerle, IKVM Java, and VB.NET.
SQL Power DQguru is an easy-to-use data cleansing and de-duping tool. The user interface puts a strong emphasis on straightforward visualization of your data and processes. It will help you cleanse your data, validate and correct addresses, and identify and remove duplicate records. Thus, you can provide your business users with complete and accurate data, and a single view of each customer, product, sales rep, and business unit.
Lynis is an security auditing and hardening tool for Unix derivatives like Linux/BSD/Solaris. It performs an in-depth scan on the system to detect software and security issues. Besides information related to security, it will also scan for general system information, installed packages, and possible configuration mistakes. The software is aimed at assisting automated auditing, configuration management, software patch management, vulnerability detection, and malware scanning of Unix-based systems.
OpenAMQ is a fast, stable, free implementation of the AMQP (www.amqp.org) messaging protocol. It gives applications high-performance messaging (delivery of opaque data) across loosely connected networks. It is capable of handling up to 600k messages per second depending on the hardware, with a latency around 300 microseconds. It is multithreaded and supports C/C++ and Java on Linux, AIX, Solaris, OS/X, Windows, and OpenVMS.