Adagios is a Web-based Nagios configuration interface built to be simple and intuitive in design, exposing less of the clutter under the hood of Nagios. It has a REST interface for both status and configuration data as well a feature complete status interface that can be used as an alternative to the Nagios Web interface.
MetaPath is a tool for the analysis of metabolic pathways and associated visualization of experimental data. Built on the MetaCyc database, it provides an interactive map in which multiple pathways can be simultaneously visualized. Multiple annotations from the MetaCyc database are available, including synonyms, associated reactions and pathways, and database unification links. Metabolomics change data can be imported via simple CSV formats for visualization on targeted pathways. Pathways can be mined and removed algorithmically to identify key regulated pathways within a given dataset, providing a simper route to metabolic functions.
SQLet allows you to directly execute SQL on multiple text files, right from the Linux commandline. In one single command, you can read in text files (with or without header lines) and perform arbitrary select statements, including joins over several files. SQLet can thus replace awk or grep in some instances.
EZDM (ezdungeonmaster) is a simple set of tools for dungeon managers, targeting AD&D 2nd edition rules. It's not an RPG game, but some helper tools for people DM-ing real games, and is designed not to get in the way of roleplay and storytelling, but simply help do the math during encounters and leveling. Dice rolling can be done by the computer, or the tools can be set for manual dice, in which case you simply enter the results of the roll. All game data, charts, and character sheets are stored in JSON format. The EZDM kit defaults to using a simple dialog-based GUI which requires easygui, but a console interface is also available.