iNA is a computational tool for quantitative analysis of fluctuations in biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to the stochastic nature of chemical reactions and cannot be ignored for when some molecules are present only in very low copy numbers as is the case in living cells. The SBML-based software computes statistical measures such as means and standard deviations of concentrations within a given accuracy using the analytical system size expansion. The result of iNA’s analysis can be tested against the computationally much more expensive stochastic simulation algorithm.
The cptutils package contains a number of utilities for the manipulation of color gradients; mainly for translating between different formats. Formats supported include ggr (GIMP gradient), cpt (GMT color palette table), avl (Arcview Legend), the PaintShop Pro and Photoshop formats, SVG, and CSS3.
PAFCalc (Planted Aquarium Fertilizers Calculator) for Android is a useful utility that helps in calculations related to DIY fertilizers for planted aquariums. It has been completely written with the Android developer studio, which should ensure portability to tablets and smartphones. The app doesn't access any external functions on your device.
DHCPD Configuration Editor (DCE) is a Web service that allows you to update MAC addresses in the dhcpd.conf of an ISC DHCP server. It can load a dhcpd.conf file from a server, save a modified dhcpd.conf file to a server, import a dhcpd.conf file from the local filesystem, export a modified dhcpd.conf to the local filesystem, and change the MAC address of previously declared host entries. It can be used with the minimalist General Configuration Form Manager server, or with Apache and its PHP module.
JWt (Java Web Toolkit) is a library for developing accessible and interactive Web applications with an API that is widget-centric and inspired by desktop GUI APIs. To the developer, it offers abstraction of Web-specific implementation details, including graceful degradation. Under the hood, the library uses the latest techniques when available to handle events and update the user interface.
Wt is a C++ library for developing Web applications with an API that is widget-centric and inspired by existing C++ graphical user interface APIs. To the developer, it offers abstraction of Web-specific implementation details, increasing the accessibility and portability. Under the hood, the library uses the latest techniques (HTML5, Ajax, WebSockets) to handle user events and update the Web page.
synctool is a cluster administration tool that keeps configuration files synchronized across all nodes in a cluster. Nodes may be part of a logical group or class, in which case they need a particular subset of configuration files. synctool can restart daemons when needed, if their relevant configuration files have been changed. synctool can also be used to do patch management or other system administrative tasks.
fio is an I/O tool meant to be used both for benchmark and stress/hardware verification. It has support for 19 different types of I/O engines (sync, mmap, libaio, posixaio, SG v3, splice, null, network, syslet, guasi, solarisaio, and more), I/O priorities (for newer Linux kernels), rate I/O, forked or threaded jobs, and much more. It can work on block devices as well as files. fio accepts job descriptions in a simple-to-understand text format. Several example job files are included. fio displays all sorts of I/O performance information, including complete IO latencies and percentiles. Fio is in wide use in many places, for both benchmarking, QA, and verification purposes. It supports Linux, FreeBSD, NetBSD, OpenBSD, OS X, OpenSolaris, AIX, HP-UX, Android, and Windows.