GenealogyJ is a full-featured standalone Java application that can handle all of your genealogic information. It provides different graphical components for working on your family tree and is GEDCOM compliant. It requires a Java 1.4 Virtual Machine and runs on Windows / Mac / Linux.
GWintree is a GEDCOM-based genealogy program. It provides facilities to record, view, edit, and merge genealogy data, and to produce genealogy charts, family trees, and reports in a range of formats, including HTML. Charts can show all relatives, ancestors only, or descendants only. HTML charts allow you to click on a person in your HTML report to see where they are on the chart. Automatic matching and merging of genealogy data between files is supported.
Morcego is a 3D graph browser for viewing and navigating any graph-like structure. Examples of such structures include social networks, site maps, hierarchies, and genealogy trees. It currently only support simple graphs. It's already integrated into TikiWiki. Morcego is not meant to provide a solution for the end user, but to be embedded in a Web application by developers. It's a Java applet that communicates with an XML-RPC server to load the graph that is displayed.
Web Gedcom Viewer is a full Web-based Gedcom viewer that uses MySQL or SQLite on the backend and Perl as the frontend with templates for easy HTML manipulation. Gedcom files are in the standard format exported by family tree/genealogy applications such as Family Tree Maker or Personal Ancestory File. Plugging in different SQL types is a breeze, as all of the SQL statements are centralized to a single pm.
MyNukeGenealogy is a plugin-module for PHPNuke or PostNuke to build up a family or surname Web site. It allows for displaying and editing genealogical data (individuals, families, events, notes, sources, etc.) and importing gedcom files (export functionalities will follow). It has a flexible template system to customise the layout and design.