Nephthys provides a Web interface to create file-sharing "buckets", through which data can be shared. Nephthys handles the buckets in the local filesystem of the server. Access and data transfer is made via FTP and WebDAV. Nephthys itself does not provide the access protocol, but relies on well known projects like Apache HTTPD (WebDAV) and ProFTPD (FTP).
FileRunner is a two-pane file manager for Unix. It is simple and efficient and has a built-in FTP/SFTP/adb client. It does a reasonable (and improving) job on Windows systems. It features a simple and powerful interface, history and Hotlist (bookmarks), a recursive directory menu of the entire filesystem tree, browsing FTP, sFTP, and adb directories as easily as normal directories, asynchronous file transfers, cached directory listings, asynchronous file operations, built-in command shell windows synchronized with file panels, extensibility by adding your own command buttons, and user-defined file pattern/actions.
MCM is a set of tools that ease the management of multiple servers. It's aimed at network or system administrators who need to connect to different servers by different means every day. It can be used via an ncurses interface without requiring an X server, and via a GNOME-based GUI.
Event Horizon (EVH) is a Web-based application which facilitates the secure transfer of files. Originally designed to replace FTP transfers, EVH currently allows uploads via HTTP and can also handle files uploaded via FTP. All file uploads are assigned an expiration period, after which the file is permanently removed from the system. This allows for automatic cleanup as well, keeping the underlying filesystem in tip-top shape.