Ujorm is an easy-to-use ORM framework based on key-value objects. The framework was designed for rapid Java development with great performance and a small footprint. The key features are type safe queries, relation mapping by Java code, no entity states, and a memory overloading protection cache.
Zorba is a general-purpose XQuery processor implementing in C++ the W3C family of specifications. It is not an XML database. The query processor has been designed to be embeddable in a variety of environments, such as other programming languages extended with XML processing capabilities, browsers, database servers, XML message dispatchers, or smartphones. Its architecture employes a modular design, which allows customizing the Zorba query processor to the environment’s needs. In particular, the architecture of the query processor allows a pluggable XML store (e.g. main memory, DOM stores, persistent disk-based large stores, and S3 stores).
namebench finds the best DNS servers to use for your machine, benchmarks them, and outputs pretty graphs to tell you why they are optimal. It supports multiple data sources such as Alexa, your browser history, or tcpdump replays in order to generate the most relevant and individualized recommendation.
VRaptor3 is a fully-fledged Java Web framework focused on fast development and maintainable code. It intends to make RESTful application development easy. A resource corresponds to a business logic annotated with its path and HTTP method. It runs inside DI Containers (Spring or Pico out of the box) and, therefore, enables full integration with them. Also, using Hibernate is easier: its session is automatically injected by VRaptor, so you just have to use it. VRaptor3 is refactor-friendly, especially in its redirecting configuration. It is also nicely extensible.
PathVisio is a bioinformatics tool that lets you do everything with biological pathway diagrams. PathVisio helps you organize biological information and lets you present or publish that information easily. You can create and draw pathways, export them to many image formats, annotate them with links to online biological databases such as Ensembl, Entrez or HMDB, and add comments and literature references from pubmed. PathVisio also lets you sort through high-throughput experimental data in pathway context. This is a much more pleasant way to present data than just a large table. You can import microarray, proteomics or metabolomics data. PathVisio has a plugin interface that lets users customize it to new analysis types, new visualization methods, and new pathway formats. PathVisio is compatible with WikiPathways.
lambdaj is a Java library that allows you to manipulate collections in a pseudo-functional and statically typed way. The main purpose of lambdaj is to partially eliminate the burden of writing (often nested and poorly readable) loops while iterating over collections. In particular, it allows you to iterate a collection in order to filter its items on a given condition, convert each item with a given rule, extract a given property from each item, sort the items on the values of one of their properties, group or index the items on the value of one or more properties, invoke a method on each item, or aggregate the items or the values of one of their properties. It allows all this without having to write a single explicit loop.
Ametys is a powerful Web CMS used by many institutions of higher education and government, but also industries and SMEs. It is known for its ergonomic design which promotes ease of use, its social Web functionality, and the ability to manage a large number of users. It makes content publishing accessible for the non-programmer and provides an easy editorial interface very similar to Microsoft Office applications.