Lernstick Exam Environment is a live Linux distribution with a focus on exam situations, usually installed on USB sticks. To provide up-to-date software choice on a solid base, it uses a combination of Debian stable with official and custom backports. Access to local storage media (internal hard drive, other USB storage media) or network access is prohibited per default, but certain network connections (e.g., to network printers or websites) can be allowed in a whitelist.
Data Shovel Pinnacle Performance Utilities is a collection of utilities for large input/output tasks. bare takes line feed-separated file names on standard input and concatenates the file contents on standard output. baresha512 takes line feed-separated file names on standard input and provides the SHA512 message digest for the concatenated file content on standard output. Both can optionally open and read files with O_DIRECT, bypassing the kernel's block cache. cock provides a digital petcock. It relives I/O pressure on the kernel by rate limiting data throughput. It can auto-throttle to mitigate lag spikes, or use a specified megabytes-per-second rate limit.
Rmollib is a library for manipulating molecules and systems of molecules stored in pdb, gro, and pdbz files. It gives you access to molecules on the atomic, molecular, or system level. The system can be edited in memory and then dumped to disk. It is meant for use with tool such as gromacs, Gaussian, and ToFeT. Rmoltools is a collection of command line tools that use Rmollib to manipulate and edit pdb and gro files. You may find them useful, but they principally serve as an example of how to use Rmollib.
The Arakhnê.org Foundation Classes (AFC) is a collection of Java libraries (based on Maven) that provides a collection of utilities that are not provided in the standard Java API. Many utility classes are provided: file filters, progress indicators, arrays, collections, VM utilities, text utilities, math tools (point, vector, matrix, shape, etc.), widgets for AWT, Swing, and Android, a platform-independent graphical API, and more.
Erudite is an application for training and testing back propogation neural networks using the ANNeML (Artifical Neural Network Markup Language) XML format. It supports testing and training neural nets with CSV files and has support for randomized training sets, optional adapting learning rate, sigmoid or hyperbolic tangent transfer functions, optional bias and weight adjustment locking, and more.
Brimbox is a database system that was designed to bridge the gap between spreadsheets and custom databases. It is intended to be an alternative to Access and Filemaker. Although Brimbox has its own modular approach, it is customizable in the spirit of Wordpress, though it is a database interface and not a CMS.