Amiba is a Gene Expression Programming (GEP) framework for Java. GEP is, like genetic algorithms, a branch of evolutionary computing. The framework separates the process of evolution from the process of interpretation of the chromosome, allowing the use of various schemes. For example, graphs may be used as terminals and graph operations as operators in the chromosome instead of the usual double precision numbers. It implements mutation, transposition, and recombination. Options and rates are easily configured through an XML file. A mechanism to load fitness cases in bulk is also provided.
VncThumbnailViewer gives you the ability to connect to and watch multiple computers at the same time using the VNC protocol. It presents live thumbnail views of many computers in a single window, scaling and rescaling the views to best fit. Double-clicking on a single thumbnail allows you to enlarge it and take control of that computer's keyboard and mouse.
Grammar Browser provides a simple-to-use graphical interface to the grammatical structure and relations of any text, as parsed by the Stanford Parser. It contains a grammatical relation editor to modify, import, and export grammatical relation definitions (tregex patterns and features).
The Spiffy Framework is a collection of well-tested and often used helper methods and utility classes. Such methods and classes solve existing and recurring practical problems, and remedy annoying features of the Java language or its frameworks. The value of this framework is not only the code, but also the ideas for solutions to the problems. The goals are to collect and centralize "utility abstractions", and to serve as a repository of knowledge/smart ideas for programmers to learn.
Babase is a baboon data management system. It is designed to facilitate the retrieval, storage, maintenance, and analysis of the following broad data categories: group membership, social status (dominance rank), life events, sexual cycle events (including progeny), sexual cycle day-to-day status, dyadic social interactions, focal animal samples, and multi-party social interactions. Integration of other data is supported. Babase is designed for Web access.
Zeobuilder is a user-friendly GUI toolkit for the construction of advanced molecular models. It is extensible via a plugin framework and contains several advanced tools for building, aligning, manipulating, and analyzing molecular structures. It describes a molecular model with a hierarchical data-structure of reference frames. This facilitates operations on models at different levels of detail.
vov (Vov's Obsessive Von-neumann) is a tool that emulates the behavior of a von Neumann machine. It is basically an interpreter that reads files in the form of memory assignments and executes the encoded instructions. The vov's instructions allow you to perform simple arithmetic data manipulation. It is a very useful tool to see if your programs work and how. You can run a vov program from a file as you would any other shell, Perl, Python, or Ruby program.
EngLab is a cross-compile mathematical platform with a C like syntax intended to be used both by engineers and users with little programming knowledge. It supports programming through small script files but also enables users to easily compile their own functions as shared objects and use them through the program's main interface.