XWiki is a WikiWiki clone written in Java that supports many popular features of other Wikis like the Wiki syntax, version control, attachments, security, and searching, but also many advanced features like templates, database and dynamic development using scripting languages (Velocity, Groovy, Ruby, Python, PHP, and more), an extension system and skinability, J2EE scalability, an XML/RPC remote API, statistics, RSS feeds, PDF exporting, WYSIWYG editing, an Office viewer and importer, and a lot more.
Bugzero is a Web-based change management and issue tracking system used in a distributed team environment to track software bugs, hardware defects, test cases, or any other issues. It can also be used equally well as a helpdesk customer support, trouble ticketing, or email management system to collect and manage customer feedbacks, incidents, requests, and issues. It is easy to use, but still flexible and adaptive, and can be configured to fit to your organization's unique business process and workflow.
TYPO3 CMS is a Web Content Management System which features automatic creation of navigational menus, headlines, and other dynamic graphical elements, automatic conversion and scaling of images, the ability to present different templates based on variables such as client browser or country code, support for multiple templates on a site, and a built-in password-protection option. Pages can be timed to be shown on a certain date, be hidden on a certain date or just temporarily hidden. TYPO3 supports search in SQL-databases and redesigning of a website at once is just a matter of creating a single new template.
album is a free HTML/XHTML photo album and gallery generator that supports themes/skins. You can choose different themes or write your own to get different layouts and styles. It creates all your thumbnails (including directory thumbnails) and descends into directories so you can organize your photos. See the home page for more examples. album is also multi-lingual, with many languages being added all the time. N.B.: The purchase link is provided for donations; the software does not cost anything.