The NCBI C++ Toolkit provides portable libraries and applications for assisting genetic science. These include libraries for networking, SQL and BerkeleyDB access, CGI and HTML handling, ASN.1 and XML handling, sequence alignment engines, sequence retrieval engines, BLAST database engines, FLTK and OpenGL graphics toolkits, and basic system utilities.
rimric interactive offers complete intranet/Internet databasing and collaboration solutions for any sized business or project. You can maintain invoices, purchase orders, contacts, investment groups, securities, and other data sets, or establish a Wiki based on standards, all using the fastest technologies available.
oo.WebsiteTools is a set of basic tools which are needed on almost every Web site. Using these tools speeds up your Web development radically. It consists of three different parts: oo.Admin, oo.Sql, and oo.Ajax. oo.Admin is used to administer the site and allow users to manage their accounts. oo.Sql lets you change database backends without changing your SQL code. oo.Ajax is an AJAX library that can load and update div elements, send forms without reloading the page, and more.
SiSU (Structured information, Serialized Units) is a lightweight markup based, text structuring and publishing framework (that features granular search). With minimal markup of a plaintext file, it produces: plain-text, HTML, XHTML, XML, ODF, LaTeX, PDF, and populates an SQL database at an object/paragraph level for granular searches. Prepare documents using your text editor of choice, then use SiSU to generate the desired output formats. SiSU is controlled from the command line.
ServingXML is a markup language for expressing XML pipelines and an extensible Java framework for defining the elements of the language. It defines a vocabulary for expressing flat-XML, XML-flat, flat-flat, and XML-XML transformations in pipelines. The accompanying console app supports reading content as XML files, flat files, SQL queries, or SAX events, and writing it as XML, HTML, PDF, or mail attachments. This software is especially suited for converting flat file or database records to XML, with its support for namespaces, variant record types, multi-valued fields, segments and repeating groups, hierarchical grouping of records, and row-by-row validation with XML Schema. There is also an API for embedding the software in a Java application.
RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents. Command-line tools allow interactive or scriptable access to the data which are stored in a SQL database. RefDB can also be accessed through a Web interface, a SRU interface, or via editor extensions (Emacs/vim). Libraries for Perl and PHP are available for programmers. RefDB provides sophisticated character encoding handling, using Unicode by default.
phpFaber CMS is a Web-based content management system that fully supports MySQL. phpFaber CMS separates content from code and allows your organization to focus on content. The code, layout, and graphics are consistent through every single page of your site. phpFaber CMS (bundle edition) includes the CMS engine and modules for articles, banner ads, bookmarks, downloads, FAQs, feedback, GeoIP, Google sitemaps, links, news, newsletters, polls, recommendations, searching, and user management.
Pinpin content is a lightweight CMS providing Unix-like group/user managment, XHTML 1.1 strict rendering, wiki syntax, a node structure, CSS themes, templates, various element containers (text, forum, and news), multilgual elements (autodection and versioning), inclusion of elements inside elements (e.g. an introduction in 3 languages included in a English-only body, footer, etc), and image thumbnailing.
Generating new objects for the Query Object Framework is repetitive, tedious, and time consuming. Qof Generator automates this process in PHP to build a working test program linked against QOF. Objects are created from an HTML form using a temporary MySQL cache and exported with Makefile, ./autogen.sh, ChangeLog, README, C source code, and doxygen mark-up comments in a tarball built by the PHP code.