libmistat is a library of statistical functions. It supports sorting and basic descriptive statistics. Data is sent to functions in the matrix/vector format found in the GSL Scientific Library. The statistical routines have been tested for accuracy using NIST data where available.
Block Locally Optimal Preconditioned Eigenvalue Xolvers (BLOPEX) is a package, written in C and MATLAB, that includes an eigensolver implemented with the Locally Optimal Block Preconditioned Conjugate Gradient Method (LOBPCG). BLOPEX supports parallel MPI-based computations. BLOPEX is incorporated in the HYPRE package and is available as an external block to the PETSc package. Its main features are a matrix-free iterative method for computing several extreme eigenpairs of symmetric positive generalized eigenproblems; a user-defined symmetric positive preconditioner; robustness with respect to random initial approximations, variable preconditioners, and ill-conditioning (up to 10^16) of the stiffness matrix; and apparently optimal convergence speed.
This package contains Virtual Hybridization tools. Virtual Hybridization uses sets of short probes to generate datasets for comparative genomics: given a DNA sequence and a set of probes, the typical output will give a sequence of oriented probe hits along the DNA sequence. Other tools are supplied to allow simple manipulations such as format conversion and extraction of permutations.