PINY_MD is a multipurpose, object-oriented molecular simulation package. PINY_MD is capable of performing a wide variety of molecular dynamics, electronic structure, and geometry optimization calculations. Such capabilities include force-field based ("classical") simulations on system ranging in complexity from simple molecular liquids (e.g., water, ammonia, liquid alkanes) and crystals (e.g., ice) to large biomolecular systems such as the HIV-1 protease in solution.
MoMEUnit is an instance of the xUnit architecture for unit testing of J2ME applications. It is derived from the JUnit framework. It is only CLDC 1.1 compliant. It overcomes the lack of a reflection API in the J2ME MIDP API and supports main features of the JUnit framework such as ease of development and running of tests, sharing of fixtures among different tests, the ability to perform simultaneous test runs, and much more. The results of tests are displayed with a progress bar, statistics, and lists of failures or errors with detailed messages for each test.
OpenQuasar is an object-relational persistence manager. Persistent objects and the corresponding or-mapping are described in a model. Instances of these persistence classes can interact with the database, and can be queried with a language that is oriented at the object model. It has an open architecture, is J2EE conformant, and can be run standalone or integrated with EJB application servers.
Duplication Management Framework for Eclipse is a framework for tools for code clone (i.e. duplicated code) detection and removal for Eclipse. It provides tight integration into Eclipse, enabling incremental adaptation of clone data, and enables use of various clone detection algorithms.
Countdown Timer until specified Date-Time starts a countdown to a time defined in forms. It can take a given time for the end of a countdown from form inputs which define the year, month, day, hour, minute, and second. The object can also take the end time from static page elements with identifiers which start with a given prefix. The object can start the countdown and keep updating page elements which show the remaining time to the end.
Splunk Hogs is a quick Perl script that was written to find what systems are sending too many events to Splunk and using up all the licenses. This is good for several reasons: developers will turn debugging on and use up all the licenses, which will help catch it early; INFO messages get turned on and useless events will be sent, filling up the licenses; issues will be detected that were being ignored by others. The advantage over Splunk's SaveSearch is that it outputs the raw data, so you can import it into Nagios or other tools. It collects raw data from Splunk that consists of the host, Splunk server, and the count of events that took place.
Comments script with pagination adds comments to a website, paginating them without affecting the rest of the page content or the page URL. It can be used with multiple pages of a site, whatever the type of the page URL (modified or not with mod-rewrite). It can be set to allow only logged-in users to add comments, and has many other settings and Admin management.
A Life Science Identifier (LSID) Resolver is a software system that implements an agreed LSID resolution protocol to allow higher-level software to be able to locate and access the data uniquely named by any LSID URN. This project is the first implementation of a Web service-based LSID URN resolution protocol, and includes Java J2EE, Perl, and Win32 COM/C++ client & server stacks, example programs, and tutorials on how to establish a LSID resolver for any organization.