PDFtk Server is a simple commandline tool for doing everyday things with PDF documents. You can use it to merge PDF documents or collate PDF page scans, split PDF pages into a new document, rotate PDF documents or pages, decrypt input as necessary (password required), encrypt output as desired, fill PDF forms with X/FDF data and/or flatten forms, generate FDF data stencils from PDF forms, apply a background watermark or a foreground stamp, report PDF metrics, bookmarks, and metadata, add/update PDF bookmarks or metadata, attach files to PDF pages or the PDF document, unpack PDF attachments, burst a PDF document into single pages, uncompress and re-compress page streams, and repair corrupted PDF files (where possible).
Binmay is a command line binary search and replace program. It allows one to specify a binary string (in hex) to search for and, optionally, a binary string to replace it with. One can mask both search and replace strings as one can mask an IP. It is handy for changing broken user SID/RIDs in ntuser.dat files after you move a profile from somewhere to somewhere else.
GoldenPod is a command line podcast client. It allows you to easily manage and download podcasts from the command line. It can download podcasts from standard RSS(-like) feeds, or it can attempt to parse any other cleartext document (XML or HTML) for a list of audio files and download those. For users already using BashPodder, it can function as a more feature-rich drop-in replacement for it.
phpdocr will download, prettify, and output PHP documentation for the function or class that is supplied on the command-line, much like perldoc does for Perl and ri does for Ruby. Unless you explicitly tell it not to, phpdocr will also cache the documentation locally for fast retrieval in the future.