PDFtk Server is a simple commandline tool for doing everyday things with PDF documents. You can use it to merge PDF documents or collate PDF page scans, split PDF pages into a new document, rotate PDF documents or pages, decrypt input as necessary (password required), encrypt output as desired, fill PDF forms with X/FDF data and/or flatten forms, generate FDF data stencils from PDF forms, apply a background watermark or a foreground stamp, report PDF metrics, bookmarks, and metadata, add/update PDF bookmarks or metadata, attach files to PDF pages or the PDF document, unpack PDF attachments, burst a PDF document into single pages, uncompress and re-compress page streams, and repair corrupted PDF files (where possible).
Binmay is a command line binary search and replace program. It allows one to specify a binary string (in hex) to search for and, optionally, a binary string to replace it with. One can mask both search and replace strings as one can mask an IP. It is handy for changing broken user SID/RIDs in ntuser.dat files after you move a profile from somewhere to somewhere else.
GoldenPod is a command line podcast client. It allows you to easily manage and download podcasts from the command line. It can download podcasts from standard RSS(-like) feeds, or it can attempt to parse any other cleartext document (XML or HTML) for a list of audio files and download those. For users already using BashPodder, it can function as a more feature-rich drop-in replacement for it.
make project is a command line program which makes project skeletons. It automates the task of starting a new project with the information provided from the commandline. The package created by default is a "hello world" project of the selected skeleton which is managed with autotools. There are skeletons for bash, C, C library, Python, C++, C++ library, and Perl.
audiopreview is a command-line tool that plays previews of many audio file types (Ogg, MP3, etc.), video file types (AVI, MPEG, Real, etc.), and Internet streams. It can also be used as a regular command-line media file player (i.e. play the files entirely like yauap or mpc123 would).