ODPdom is a simple DOM (Document Object Model)
parser. It can process large XML files.
Bioclipse is a rich-client platform chemistry and
biology workbench. It provides access to many open
source bioinformatics and chemoinformatics
toolkits and has plugins for the Chemistry
Development Kit, JChemPaint, Jmol, and BioJava.
A Web based service for transferring huge files.
The Horde notes/memos application.