RSS 19 projects tagged "Chemistry"

Download Website Updated 15 Mar 2002 BioJava

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Pop 157.89
Vit 2.38

BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.

Download Website Updated 22 Sep 2006 JChemPaint

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Pop 170.89
Vit 9.11

JChemPaint is a program for drawing 2D chemical structures like those found in most chemistry textbooks.

Download Website Updated 01 Oct 2006 Jmol

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Pop 197.39
Vit 8.19

Jmol is a Free, Open Source molecule viewer and editor. It is a collaboratively developed visualization and measurement tool for chemical scientists. Jmol is an active project, and there are new features being added to it on a daily basis. Users are encouraged to modify it to fit their needs and to contribute their changes to the project.

Download Website Updated 08 Mar 2001 Jude

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Pop 23.92
Vit 1.42

Jude is a rapid application development tool to develop data management workgroup applications that easy-to-maintain for developers and easy-to-use for end users. It is based on a knowledge base with an object oriented structure on the server side and a compound document agent-based user interface on the client side.

Download Website Updated 02 Nov 2001 Java Molecular Viewer

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Pop 16.73
Vit 1.41

JMV (The Java Molecular Viewer) is a molecule viewer program/component written in Java and Java3D. It is designed to be an easy-to-use, platform neutral molecular visualization tool which can be used standalone or integrated into a larger program. It provides several molecular representations, multiple coloring styles, lighting controls, and stereoscopic rendering capabilities. It loads PDB files over the web, from the RCSB protein databank, from BioCoRE filesystems, and from local filesystems. The interface can be customized by users, and can be disabled for web-based presentations of molecules to save browser space.

Download Website Updated 22 May 2011 Chemistry Development Kit

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Pop 111.15
Vit 11.42

The Chemistry Development Kit (CDK) is a library of Java classes for chemo-, bioinformatics, computational chemistry, and chemometrics. It provides important algorithms like substructure search, SMILES, Gasteiger charges, QSAR descriptor calculation, 3D structure generation, 2D layout and rendering, many IO formats, atom typing, and more.

No download No website Updated 03 Mar 2007 JOELib/JOELib2

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Pop 67.86
Vit 8.66

JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, and conversion of different chemical file formats. It is written in 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.

Download Website Updated 13 May 2003 Taverna

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Pop 49.92
Vit 1.00

Taverna is a collection of workflow enactment and description components, including a high level language for workflows called Scufl (Simple Conceptual Unified Flow Language), a pure Java object model, parser to populate the model, and a set of views and controllers (including some Swing components to drop into your workflow-enabled applications). In order to actually run workflows you also need the myGrid workflow enactment engine.

No download Website Updated 17 Sep 2003 Nomen

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Pop 31.18
Vit 1.00

Nomen is a GUI which creates chemical structures from valid IUPAC names. It outputs a 2D view and (optionally) a CML file.

Download No website Updated 16 Oct 2003 Modama

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Pop 10.58
Vit 1.00

Modama is a software project for processing and analyzing 2D detector data (images) provided by any available detectors, mainly SAX and WAX.

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icc2to4

A utility that converts an ICC profile from v2 to v4.

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TAO Translator

An online translator with some advanced features.