AMLET is software designed to estimate multinomial and mixed logit discrete choices models, which are increasingly popular in econometry. The software supports cross- sectional and panel data, and offers various optimization methods, including the new variable sample-size approach.
AMaViS (A Mail Virus Scanner) scans e-mail attachments for viruses using third-party virus scanners available for UNIX environments. It resides on a UNIX (Linux) machine and looks through the attached files arriving via e-mail, generates reports when a virus is found and sets the delivery on hold.
ANSI-CIO is a set of transparent replacements for the file functions in stdio.h and unistd.h. They offer the ability to share file accesses, and to open, read, write (and more) files concurrently. Using these functions it is possible to open a file more often than only once and to access it. All functions are completely compatible with their ANSI counterparts.
AODV-UU (Ad-hoc On-demand Distance Vector Routing, from Uppsala University) is a routing protocol under investigation by the IETF for use in ad-hoc networks, where both end-users and routers are mobile. This implementation supports IPv6 and multicasting (with the appropriate patch) and is compliant with RFC 3561.
APBS is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation, including simulation of diffusional processes to determine ligand-protein and protein-protein binding kinetics, implicit solvent molecular dynamics of biomolecules, solvation and binding energy calculations to determine ligand-protein and protein-protein equilibrium binding constants and aid in rational drug design, and biomolecular titration studies.
APD is a general purpose non-interactive PHP profiler/debugger that produces formatted strace/truss type reports. APD supports full stack backtraces via calls similar to croak() in Perl's carp. APD is a Zend Extension and is designed to provide timing with the minimal performance impact. APD supports varying levels of debugging and can be turned on/off in individual scripts.