AIBash is a project which aims to make Bash act more intelligently. It features typing error-correction and the ability to learn that certain file suffixes are associated with certain programs so that other programs are filtered out while pressing TAB. Other features are planned for the future.
AMLET is software designed to estimate multinomial and mixed logit discrete choices models, which are increasingly popular in econometry. The software supports cross- sectional and panel data, and offers various optimization methods, including the new variable sample-size approach.
APBS is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation, including simulation of diffusional processes to determine ligand-protein and protein-protein binding kinetics, implicit solvent molecular dynamics of biomolecules, solvation and binding energy calculations to determine ligand-protein and protein-protein equilibrium binding constants and aid in rational drug design, and biomolecular titration studies.
ASCEND is an interactive environment for modeling, debugging, and solving large systems of nonlinear algebraic or differential equations. Oriented towards chemical engineering applications, it includes a large Open Source thermodynamic properties database. The interactive design allows users to inspect and solve very difficult nonlinear systems. It includes plotting abilities and is scriptable using both Python and Tcl/Tk.