iNA is a computational tool for quantitative analysis of fluctuations in biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to the stochastic nature of chemical reactions and cannot be ignored for when some molecules are present only in very low copy numbers as is the case in living cells. The SBML-based software computes statistical measures such as means and standard deviations of concentrations within a given accuracy using the analytical system size expansion. The result of iNA’s analysis can be tested against the computationally much more expensive stochastic simulation algorithm.
OpenMW is an attempt to reimplement the popular role playing game Morrowind. It aims to be a fully playable implementation of the game that will run on Linux, Windows, and Mac OS X. No game data is distributed with the code; the user must already own a copy of Morrowind to use the software.
Wt is a C++ library for developing Web applications with an API that is widget-centric and inspired by existing C++ graphical user interface APIs. To the developer, it offers abstraction of Web-specific implementation details, increasing the accessibility and portability. Under the hood, the library uses the latest techniques (HTML5, Ajax, WebSockets) to handle user events and update the Web page.
libcsdbg is a C++ exception stack tracer. When an exception is thrown, caught, and handled, libcsdbg offers the tools to create and process the exception stack trace, the path the exception has propagated up the call stack, unwinding it up to the section were it was handled. The traces are detailed with demangled function signatures and additional addr2line information (the source code file and line from which each function was called). libcsdbg can use all the well-known objective code file formats (a.out, elf, coff, ecoff, etc.) and can easily be used as the base for your own instrumentation code. libcsdbg transparently loads the symbol tables of the chosen dynamic libraries and of the executable, demangles function symbols to complete signatures, and binds function names to runtime addresses (even for the DSO symbols).
MathGL is a library for making high-quality scientific graphics under Linux and Windows, fast data plotting and handling of large data arrays, working in window and console modes, and easily embedding into other programs. It has more than 40 general types of graphics for 1d, 2d, and 3d data arrays. It can export graphics to raster and vector (EPS or SVG) formats. It has an OpenGL interface and can be used from console programs. It has functions for data handling and MGL language scripting for simplification of data plotting. It has several types of transparency and smoothed lightning, vector fonts and TeX-like formula drawing, an arbitrary curvilinear coordinate system, and many other useful things.
GNU ddrescue is a data recovery tool. It copies data from one file or block device (hard disk, CD-ROM, etc.) to another, trying to rescue the good parts first in case of read errors. GNU ddrescuelog is a tool that manipulates ddrescue logfiles, shows logfile contents, converts logfiles to/from other formats, compares logfiles, tests rescue status, and can delete a logfile if the rescue is done.
Java Grinder takes Java byte-code from a class file and compiles it into an assembly code text file that can be assembled and run on microcontrollers and CPUs including MSP430, dsPIC, 6502 (Commodore 64), 68000, ARM, and MIPS. A Java API is provided for dealing with SPI, GPIO, Commodore 64 hardware, and more.