The Ape Base Compile System is a set of scripts that leverage ESP EPM and MREPO to maintain Red Hat based systems that require custom and secluded binaries. It achieves cross platform reproducible compiles applications like Apache HTTPD, MySQL, and PHP, supports a common --prefix parent directory to allow different versions of an application to be installed, provides an easy method to switch between application versions, places selected application binaries in a central "bin" directory, supports delivery via Yum and other common installers, and provides a method for non-compiled "skeleton" files to be included with installation and distribution.
Esra is a scriptable, scalable, and highly hackable molecular mechanics library for Java. Its primary purpose is the statistical analysis of trajectory data generated with packages such as GROMOS, GROMACS, or AMBER, but it can also be used as a standalone package for performing simple molecular dynamics and Monte-Carlo simulations. It can be scripted with Jython, Mathematica, or Matlab.