RSS 5 projects tagged "Biology"

No download Website Updated 18 Dec 2010 SwissParser

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Pop 23.13
Vit 2.30

SwissParser allows you to define in a few lines a parser able to deal with the flat file format used in bioinformatics software such as UniProt, KEGG, etc.

Download Website Updated 24 May 2010 StarORF

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Pop 34.79
Vit 37.85

StarORF is a tool that facilitates the identification of the protein(s) encoded in DNA sequences and allows for transforming input sequence in its reverse complements. It allows students to define the minimal ORF length detected and highlighted by the software. Students can see putative ORF protein sequence (longer than specified ORF length), visualize start and stop codons in the sequence, and navigate imported sequences. The StarORF site contains a software user manual, video tutorial, and exercises applicable to high school and college classrooms.

No download No website Updated 10 Aug 2010 CanvasXpress

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Pop 19.34
Vit 36.77

CanvasXpress is a JavaScript library based on the HTML5 canvas tag that provides a generic and simple way to display genomics data. It supports bar graphs, line graphs, bar-line combination graphs, box plots, dot plots, area graphs, stacked graphs, percentage-stacked graphs, correlation plots, Venn diagrams, heat maps, Newick trees, 2D-scatter plots, 2D-scatter bubble plots, 3D-scatter plots, pie charts, networks (or pathways), and a genome browser. It also supports a few data transformations like log and exponential transformation, z-score, percentile transformation, and ratio. It also supports grouping of samples, zooming, events, and more.

No download Website Updated 22 Jul 2011 Wildlife Stock Monitor

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Pop 24.62
Vit 1.52

Wildlife Stock Monitor is a grid-based GIS system for inventorying biotopes.

Download No website Updated 30 Jun 2012 BEL Framework

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Pop 23.87
Vit 1.03

The BEL Framework is a platform designed to overcome many of the challenges associated with capturing, integrating, and storing knowledge within an organization, and sharing the knowledge across the organization and between business partners. Central to the design of the framework is the ability to integrate knowledge across different representational vocabularies and ontologies. This allows organizations to combine knowledge from disparate sources such as existing applications, internal sources, and business partners. It can then be made available through a standardized set of computable networks and APIs.

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webrowse

Shell-Browser interfacing and Web browsing tools.

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LeechCraft

A modular live environment.