228 projects tagged "Bioinformatics"

Download Website Updated 04 Feb 2007 chemical-mime-data

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Pop 13.11
Vit 1.42

The chemical-mime-data package is a collection of data files to add support for various chemical MIME types on Linux/Unix desktops, such as KDE and GNOME. Chemical MIME types were proposed in 1995, though it seems they have never been registered with IANA. But they are widely used, and the project's aim is to support these important but unofficial MIME types. Initial data was taken from "The Chemical MIME Home Page" of Henry Rzepa.

No download Website Updated 21 Dec 2006 Bird Weights

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Pop 9.59
Vit 1.00

birdweights is a package of scripts to analyze data from an automated system for the measurement of mass and identification of birds at perches.

Download Website Updated 10 Sep 2007 Optimization Algorithm Toolkit

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Pop 35.28
Vit 2.36

Optimization Algorithm Toolkit is a workbench and toolkit for developing, evaluating, and playing with classical and state-of-the-art optimization algorithms on standard benchmark problem domains. It includes reference algorithm implementations, graphing, visualizations, and much more.

No download Website Updated 24 Oct 2006 ParFE

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Pop 14.00
Vit 52.66

parFE is fully-parallel high-performance finite element code targeted to the modeling of trabecular bones in humans. It employs scalable multigrid solvers for efficient solutions on massively parallel computers.

Download Website Updated 04 May 2007 PrIMETV

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Pop 14.76
Vit 1.80

PrIMETV is a program that can visualize tree-within-tree phenomena such as gene/species tree reconciliations. Output can be given in a range of formats, including PostScript, Fig, and SVG. Thus, it is possible to easily edit the final illustration in many available drawing programs. PrIMETV can also directly manipulate important attributes such as color and layout policy.

Download Website Updated 22 Jan 2008 Adun

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Pop 24.70
Vit 2.91

Adun is an extensible biomolecular simulation program that includes data management and analysis capabilities.

Download Website Updated 22 Sep 2006 spsim

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Pop 17.23
Vit 1.00

spsim is a simple yet realistic diffraction pattern simulator for single particle diffraction experiments, as those made possible with the advent of XFELs. It takes a PDB as input and outputs noise-free and realistic diffraction patterns according to the experimental conditions chosen by the user.

Download Website Updated 27 Sep 2007 Fast Genetic Algorithm

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Pop 118.64
Vit 4.55

FGA (Fast Genetic Algorithm) is a simple yet powerful implementation of genetic algorithms. The library provides many variants of crossover and selection procedures, and a parallel version of the algorithm is included.

Download Website Updated 21 Dec 2006 QuteMol

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Pop 33.85
Vit 2.03

QuteMol is an interactive, high-quality molecular visualization system. QuteMol exploits the capabilites of current GPUs through OpenGL shaders to offer an array of innovative visual effects. QuteMol visualization techniques are aimed at improving clarity and an easier understanding of the 3D shape and structure of large molecules or complex proteins.

Download Website Updated 04 Sep 2006 Transmuter Programming Language

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Pop 22.69
Vit 1.00

Trans (short for Transmuter Programming Language) is an extremely dynamic, biologically-inspired prototyping language providing a framework for experimenting with naturally evolving systems of objects over the net, and for exploring new ideas about recombinant software, code morphing, and evolutionary programming. Trans is also a very capable general-purpose programming language. It's fast, flexible, compact, object-oriented, highly extensible, and easy-to-learn. It can be used for rapid prototyping, or as a scripting language, an embedded language, a network server or client, a system of cooperating network nodes, a real-time control and monitoring system, and more.

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Open Camera

A camera app for Android.

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mcl-edge

A command-line network analysis workbench.