228 projects tagged "Bioinformatics"

Download Website Updated 13 May 2014 Wandora

Screenshot
Pop 376.65
Vit 69.84

Wandora is a general purpose data extraction, management, and publishing application based on Topic Maps and Java. Wandora has a graphical user interface, layered presentation of knowledge, several data storage options, rich data extraction, import and export capabilities, and an embedded HTTP server that enables dynamic publication of Topic Maps. Wandora is well suited for rapid ontology construction and knowledge mashups.

No download Website Updated 17 Jun 2008 Indiana University CLSD Parser Scripts

Screenshot
Pop 8.37
Vit 46.59

The Indiana University CLSD Parser Scripts are data ingest parsers for the Centralized Life Science Data service for use with IBM DiscoveryLink/DB2.

Download Website Updated 17 Jun 2008 IU Parallel FastDNAML

Screenshot
Pop 8.00
Vit 46.59

IU parallel fastDNAml is a program that infers evolutionary histories from genetic sequences, modified and extended from the serial version of fastDNAml to run in parallel on heterogeneous and widely distributed systems.

Download Website Updated 20 May 2008 ParseGenBank

Screenshot
Pop 9.59
Vit 1.00

ParseGenBank is a minimalistic, incremental, event-driven GenBank Flat File Format parser. It aims to efficiently produce events for keywords, features, qualifiers, and coding data. It does not attempt to parse the contents of feature or qualifier data, but provides a framework on which such a system can be built.

No download Website Updated 03 Jun 2008 Fura

Screenshot
Pop 21.79
Vit 1.43

Fura is a self-contained grid middleware that allows enablement and distribution of applications on heterogeneous computational platforms. It features a Web-based GUI, wizard-guided installation and configuration, and Web Service compliance.

Download No website Updated 13 Feb 2012 Mychem

Screenshot
Pop 16.73
Vit 3.27

Mychem is an extension that provides a set of functions that permit you to handle chemical data within a MySQL database.

Download Website Updated 22 Jul 2010 COPASI

Screenshot
Pop 24.08
Vit 3.10

COPASI is a software application for modeling and simulation of biochemical networks. The software package has a GUI that lets users define biochemical network models by entering chemical reactions and kinetic equations. A powerful simulation engine can then perform simulations of the dynamics of the networks and carry out many different computational analyses. COPASI can simulate dynamics using either an ODE approach or a stochastic chemical kinetics approach (Gillespie-type algorithms).

Download Website Updated 01 Mar 2008 Babase

Screenshot
Pop 54.31
Vit 1.00

Babase is a baboon data management system. It is designed to facilitate the retrieval, storage, maintenance, and analysis of the following broad data categories: group membership, social status (dominance rank), life events, sexual cycle events (including progeny), sexual cycle day-to-day status, dyadic social interactions, focal animal samples, and multi-party social interactions. Integration of other data is supported. Babase is designed for Web access.

Download Website Updated 28 Jul 2012 NCBI C++ Toolkit

Screenshot
Pop 49.07
Vit 4.96

The NCBI C++ Toolkit provides portable libraries and applications for assisting genetic science. These include libraries for networking, SQL and BerkeleyDB access, CGI and HTML handling, ASN.1 and XML handling, sequence alignment engines, sequence retrieval engines, BLAST database engines, FLTK and OpenGL graphics toolkits, and basic system utilities.

Download No website Updated 28 Feb 2008 Magic Garden

Screenshot
Pop 47.37
Vit 2.49

Magic Garden is an artificial plants laboratory. You can create L-System plants and modify them in real time. There are plans to add OpenGL support, animations, and some kind of garden editor.

Screenshot

Project Spotlight

Open Camera

A camera app for Android.

Screenshot

Project Spotlight

mcl-edge

A command-line network analysis workbench.