228 projects tagged "Bioinformatics"

No download Website Updated 02 Apr 2014 openModeller

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Pop 214.69
Vit 35.01

openModeller is a C++ framework providing tools and an API for ecological niche modeling using a variety of algorithms. It can be used to predict species potential distribution based on a set of georeferenced occurrence points and a set of environmental layers.

Download Website Updated 11 Mar 2009 ploticus

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Pop 289.24
Vit 7.48

PLOTICUS is a command line utility for creating bar, line, pie, boxplot, scatterplot, sweep, heatmap, vector, timeline, Venn diagrams, and other types of charts and plots. ploticus is good for automated or just-in-time graph generation. It handles date, time, and categorical data nicely, and has some basic statistical capabilities. It can output to GIF, PNG, SVG, SWF, JPEG, PostScript, EPS, and X11. You can use convenient preset options or create complex scripts with rich and detailed color and style operations.

Download Website Updated 30 Aug 2005 pyNetConv

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Pop 15.00
Vit 3.23

pyNetConv is a Python library created to help with the conversion of some network file formats. It can read/write (and convert from/to) the following file formats: Pajek network files (.net), Pajek cluster files (.clu), Cytoscape network files (.sif), Cytoscape node attributes files, and GML files.

Download No website Updated 05 Aug 2003 run_mpiBLAST

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Pop 14.49
Vit 1.00

run_mpiblast makes running mpiBLAST on a cluster in the presence of other users, and queuing systems somewhat more robust. It allows users to catch errors in configuration well in advance of the actual execution, and allows them to submit the run to a queuing system.

Download Website Updated 22 Sep 2006 spsim

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Pop 17.23
Vit 1.00

spsim is a simple yet realistic diffraction pattern simulator for single particle diffraction experiments, as those made possible with the advent of XFELs. It takes a PDB as input and outputs noise-free and realistic diffraction patterns according to the experimental conditions chosen by the user.

No download Website Updated 12 Apr 2014 wunderbar

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Pop 36.10
Vit 6.84

Wunderbar is a program which is able to identify mislabeled samples in genotype data when a few extra independent genotypes are available ("genetic barcoding"). Wunderbar calculates the likelihood that genotype mismatches have occurred by chance. It is capable of reliable and sensitive detection of sample mismatches and swaps even in the presence of numerous genotyping errors and in the presence of linkage disequibrilium between the individual genotypes. It only requires a few SNPs to work well.

Download Website Updated 21 Aug 2003 xfpd

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Pop 20.57
Vit 1.00

xfpd is an OpenGL-based molecule viewer for Folding@Home data. It is based upon fpd but was rewritten to use GLUT. It supports stereoscopic displays, hardware acceleration, and better interactive rotation.

No download Website Updated 07 Mar 2007 xpress-analyzer

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Pop 17.66
Vit 51.37

xpress-analyzer is a suite of programs for analyzing functional genomics data. Programs are included for analysis of variance, multiple test correction for significance tests, a non- linear least square fitting algorithm (four parameters), general linear models, Kolmogorov-Smirnov distance, nearest neighbor algorithm, principal component analysis, and Student's t-test. It is intended to be used as a faster alternative to R on large data sets.

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Open Camera

A camera app for Android.

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mcl-edge

A command-line network analysis workbench.