228 projects tagged "Bioinformatics"

Download Website Updated 21 Apr 2003 DPROG

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Pop 38.39
Vit 2.24

DPROG is a domain-specific language for specifying dynamic programming algorithms. Given a recursive definition of the problem, the compiler generates code for solving the problem using dynamic programming.

Download Website Updated 17 Apr 2003 OpenRasmol

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Pop 13.04
Vit 1.00

OpenRasmol is the open-sourced Molecular Graphics Visualisation Tool.

Download Website Updated 01 Apr 2003 frowns

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Pop 18.65
Vit 1.00

frowns is a chemoinformatics toolkit geared toward rapid development of chemistry-related algorithms.

No download Website Updated 01 Feb 2003 PubCrawler

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Pop 16.85
Vit 1.00

PubCrawler is a script for an "alerting" service which scans daily updates to the NCBI Medline (PubMed) and GenBank databases. When PubCrawler is run daily, the results can keep scientists informed of the current contents of Medline and GenBank by listing new database entries that match their research interests.

Download Website Updated 04 Jan 2003 SigmaPi Neurosimulator

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Pop 103.66
Vit 3.71

SigmaPi is a simulator for recurrent neural networks of arbitrary topology. It uses the LSTM neuron model, and implements a training algorithm based on RTRL with some extensions taken from RProp.

No download Website Updated 20 Nov 2002 BioConductor: software for bioinformatics

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Pop 13.93
Vit 1.45

Bioconductor is a set of packages for R (a GPLd statistical data analysis language) which focus on bioinformatics data analysis, especially gene expression arrays (Affymetrix, cDNA spotted arrays). There are tools for statistical normalization, differential expression, genomic visualization, and biological annotation. Future work includes implementation and development of better statistical methods, distributed computing, visualization, and extensions to related high-throughput laboratory assays. The primary developers are research statisticians.

Download Website Updated 07 Nov 2002 Multi-Genome Navigator

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Pop 10.15
Vit 1.00

MuGeN is a package for interactively exploring multiple annotated genomes simultaneously, possibly mixed with computational analysis results. Map information can be loaded from various sources, and resulting images can be exported in different formats. Both an interactive GUI based environment and a batch mode program are provided.

Download Website Updated 29 Mar 2002 KPumpe

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Pop 26.00
Vit 1.00

KPumpe is a diabetes diary application with support for reading records from your glucometer. It supports the Onetouch Ultra and other glucometers where glucomodule plugins are available.

Download Website Updated 15 Mar 2002 BioJava

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Pop 151.10
Vit 2.38

BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.

No download Website Updated 19 Feb 2002 SLRI Bioinformatics Workshop

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Pop 11.45
Vit 66.94

The Samuel Lunenfeld Research Institute (SLRI) Bioinformatics Toolkit is a mainly C-based cross-platform toolkit for dealing with biological information, especially protein structure/function information. It is based on the NCBI Toolkit.

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Open Camera

A camera app for Android.

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mcl-edge

A command-line network analysis workbench.