228 projects tagged "Bioinformatics"

Download Website Updated 28 Oct 2004 GeneX Va

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Pop 23.11
Vit 1.85

GeneX Va is a gene expression database supporting storage and analysis of Affymetrix GeneChip technology. It is designed to serve as a secure repository and archive for many researchers' data. It is typically expected to be installed as part of a microarray center; the software is compact enough to install for a single department or even a single user. It includes an Analysis Tree package which includes an ever-expanding set of analytical tools, and has plug-in architecture allowing easy expansion. The "Va" in the name stands for the University of Virginia version, which is a total rewrite of what was originally NCGR's GeneX.

Download Website Updated 17 Oct 2004 Artemis

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Pop 18.65
Vit 2.00

Artemis is a DNA sequence viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation. It can read and write complete EMBL and GENBANK database entries or sequence in FASTA or raw format. Extra sequence features can be in EMBL, GENBANK, or GFF format.

Download Website Updated 08 Sep 2004 CARE2X

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Pop 143.46
Vit 2.48

Care2x (formerly Care 2002) is software for hospitals and health care organizations. It is designed to integrate the different information systems existing in these organizations into a single efficient system. It solves the problems inherent in a network of multiple programs that are incompatible with each other. It can integrate almost any type of services, systems, departments, clinics, processes, data, or communication that exist in a hospital. Its design can even handle non-medical services or functions like security or maintenance. All of its functions can be accessed with a Web browser, and all program modules are processed on the server side.

Download Website Updated 04 Aug 2004 PhosphoFind

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Pop 17.26
Vit 1.00

PhosphoFind locates and quantifies phosphorylated peptides and proteins from a set of four MALDI mass spectra run in linear positive, linear negative, reflectron positive, and reflectron negative modes.

Download Website Updated 03 Aug 2004 Fingerprint-POC

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Pop 23.45
Vit 59.87

Fingerprint-POC is a fingerprint matching application using the Phase-Only Corelation method.

No download Website Updated 23 May 2004 BLAST on CD

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Pop 17.26
Vit 1.00

BLAST on CD is a live CD distribution based on DNAlinux that runs the NCBI BLAST server. It does not require installation and comes with the SARS and smallpox genomes.

Download Website Updated 19 Apr 2004 Py_ContigViewer

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Pop 10.68
Vit 1.74

Py_ContigViewer is a contig viewer, a stand alone cross-platform desktop application that uses CAP3 alignments to graphically display and validate candidate SNPs and InDels. It also simplifies PCR oligo design in an interactive mode. The extended mode provides the display of BLAST hits of annotated sequences with intron positions for the selected contig. Py_ContigViewer works in conjunction with DIS (Deletion, Insertion, Substitution) SNP discovery pipeline at http://www.atgc.org/SNP_Discovery/.

No download Website Updated 16 Apr 2004 Asymptopia Flashcard System

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Pop 50.20
Vit 3.26

Asymptopia Flashcard System uses Motif and LaTeX to produce, manage, and use attractively formatted flashcards. You load some or all of your "collections" and set the timer for pop-up frequency. The GUI interface and "Collection Manager" make creating and modifying flashcards as simple as pushing a single button. A knowledge of LaTeX is only required when entering special symbols.

Download No website Updated 31 Mar 2004 jgram

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Pop 19.39
Vit 1.00

jgram is a simple markov-chain library suitable for building rudimentary n-gram representations of sequences of any Java objects. It has an extensible scoring mechanism and a generator for traversing a random path through n-gram states based on transition score.

Download Website Updated 31 Jan 2004 Brook for GPUs

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Pop 51.81
Vit 1.00

Brook for GPUs is a compiler and runtime implementation of the Brook stream programming language for modern graphics hardware. The goals for this project are to demonstrate general purpose programing on GPUs, to provide a useful tool for developers who want to run applications on GPUs, and to research the stream language programming model, streaming applications, and system implementations.

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Open Camera

A camera app for Android.

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mcl-edge

A command-line network analysis workbench.