228 projects tagged "Bioinformatics"

Download Website Updated 07 Mar 2006 ClusterControl

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Pop 31.97
Vit 1.00

ClusterControl is a Web interface to simplify distributing and monitoring (bioinformatics) applications on Linux cluster systems. It is based on a modular concept that enables integration of command line oriented programs into the application framework of ClusterControl. The system enables integration of different applications accessed through one interface and executed on a distributed cluster system. It uses Apache, PHP, and OpenPBS or Sun Grid Engine.

No download Website Updated 07 Mar 2006 lazar

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Pop 18.81
Vit 54.81

lazar (Lazy-Structure-Activity Relationships) is a tool for the prediction of toxic activities of chemical structures. lazar derives predictions from databases with experimental toxicity data. It searches in these databases for compounds with similar structures and calculates the prediction from their measured activities.

Download Website Updated 28 Feb 2006 CoaSim

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Pop 42.31
Vit 5.96

CoaSim is a tool for simulating the coalescent process with recombination and gene conversion under the assumption of exponential population growth. It efficiently constructs the ancestral recombination graph for a given number of individuals and uses this to simulate samples of SNP and micro satellite haplotypes/genotypes. The generated sample can afterwards be separated in cases and controls, depending on the states of selected individual markers. The tool can accordingly also be used to construct cases and control data sets for association studies.

Download Website Updated 27 Jan 2006 ImageJ

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Pop 58.22
Vit 1.43

ImageJ is an image processing program inspired by NIH Image for the Macintosh. It can display, edit, analyze, process, save, and print 8-bit, 16-bit, and 32-bit images. There are modules for biology, astronomy, nuclear medicine, physics, and more. If you can take a picture of something, whether with a microscope, a telescope, an oscilloscope, an xray machine, or a scanner, then this program will let you enhance, manipulate, and measure the results.

Download Website Updated 03 Jan 2006 Staden Package

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Pop 34.90
Vit 1.90

The Staden Package is a set of interactive tools for DNA sequence assembly and editing, as well as DNA and protein sequence analysis, the best known of which is "gap4".

No download Website Updated 16 Nov 2005 Sample Inventory Program

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Pop 30.98
Vit 1.00

The Sample Inventory Program (SIP) is a laboratory inventory management system (LIMS) for Zope. Many integration tests exist for various aspects of the SIP application, ranging from command line importing of samples and project configuration to CSV Web-based importing of sample modifications.

Download Website Updated 11 Nov 2005 StrBio

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Pop 7.87
Vit 1.00

StrBio is a set of Java classes useful for development of software for computational structural biology research.

Download Website Updated 27 Oct 2005 JFDraw

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Pop 115.30
Vit 3.99

JFDraw is a Java vector graphics drawing application and library package. It is focused on vector graph drawing field. It is useful for mechanical, electronic, architectural graph drawing applications, or even business process or workflow graphs.

No download Website Updated 07 Sep 2005 Vigyaan

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Pop 27.75
Vit 1.52

Vigyaan is an electronic workbench for bioinformatics, computational biology, and computational chemistry. It is a Linux-live CD containing all the required software to boot the computer with ready to use modeling software. It includes Artemis, Bioperl, BLAST (NCBI-tools), ClustalX, Cn3D, EMBOSS tools, Garlic, GROMACS, Ghemical, GNU R, Gnuplot, GIMP, ImageMagick, JMol, MPQC, NJPlot, Open Babel, Octave, PSI3, PyMOL, Rasmol, Raster3D, SMILE, TINKER, XDrawChem, Xmgr, and Xfig.

Download Website Updated 30 Aug 2005 pyNetConv

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Pop 15.00
Vit 3.23

pyNetConv is a Python library created to help with the conversion of some network file formats. It can read/write (and convert from/to) the following file formats: Pajek network files (.net), Pajek cluster files (.clu), Cytoscape network files (.sif), Cytoscape node attributes files, and GML files.

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Project Spotlight

Open Camera

A camera app for Android.

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Project Spotlight

mcl-edge

A command-line network analysis workbench.