226 projects tagged "Bioinformatics"
Updated 20 Dec 2008
Plasmidb
| Pop | 26.85 |
|---|---|
| Vit | 5.04 |
Plasmidb is a database management system for manipulating, viewing, and storing molecular biology information rapidly and easily. It is capable of handling constructed plasmids, clones, standard vectors, primers, antibiotics, enzymes, and more.
Updated 20 Jul 2012
REMITT
| Pop | 64.83 |
|---|---|
| Vit | 4.64 |
REMITT Electronic Medical Information Translation and Transmission is a standalone electronic medical billing solution. It works independent of any specific electronic medical record (EMR) or practice management (PM) system, and can interface with any EMR or PM system that implements its API. The first system to do so is FreeMED.
Updated 01 Nov 2004
AntFlow
| Pop | 65.66 |
|---|---|
| Vit | 1.00 |
AntFlow builds upon Apache Ant to provide a new approach to simplifying system automation that uses pipelines of hot folders chained together to perform a given task. Using XML, it associates an automated task such as data transfer, encryption, or XML processing with a directory on the local system. Whenever a file is copied or written into the hot folder, the associated task is executed and the file is moved to the next hot folder in the pipeline for further processing.
Updated 25 May 2006
Pattern Classification Program
| Pop | 90.43 |
|---|---|
| Vit | 2.71 |
PCP (Pattern Classification Program) is a machine learning program for supervised classification of patterns. It runs in interactive and batch modes, and implements the following machine learning algorithms and methods: k-means clustering, Fisher's linear discriminant, dimension reduction using Singular Value Decomposition, Principal Component Analysis, feature subset selection, Bayes error estimation, parametric classifiers (linear and quadratic), pseudo-inverse linear discriminant, k-Nearest Neighbor method, neural networks, Support Vector Machine algorithm (SVM), model selection for SVM, cross-validation, and bagging (committee) classification.
Updated 08 Nov 2004
open SPEAR
| Pop | 12.04 |
|---|---|
| Vit | 55.85 |
open SPEAR stands for open Simulator of Physical Environment for Agents Research. It is a C++ library designed to build an efficient multi-agents and robotics simulation. The main audience for this project is the robotics/artificial life community.
Updated 12 Sep 2008
Redet
| Pop | 271.50 |
|---|---|
| Vit | 11.44 |
Redet is a tool for developing and executing regular expressions using any of more than 50 search programs, editors, and programming languages, intended both for developing regular expressions for use elsewhere and as a search tool in its own right. For each program in each locale, a palette showing the available constructs is provided. The properties of each program are determined by runtime tests, which guarantees that they will be correct for the program version and locale. Additional features include persistent history, extensive help, a variety of character entry tools, and the ability to change locale while running. Redet is highly configurable and fully supports Unicode.
Updated 01 Feb 2005
mozCellML
| Pop | 14.97 |
|---|---|
| Vit | 2.01 |
mozCellML is a Mozilla based CellML tool. It can be used to edit boundary conditions, integrate models (using a Runge- Kutta method), and fit parameters to models (using Levenberg-Marquardt). It supports both CellML 1.0 and CellML 1.1 documents.
Updated 29 Jan 2005
ProteomeCommons.org IO Framework
| Pop | 25.10 |
|---|---|
| Vit | 1.42 |
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
Updated 17 Jan 2005
ProteomeCommons.org Java Analysis Framework
| Pop | 25.34 |
|---|---|
| Vit | 1.00 |
ProteomeCommons.org Java Analysis Framework is a framework for referencing common mass spectrometry data such as atoms and residues. This framework provides a programmer with an easy-to-use library for writing programs that rely on common mass spectrometry data. The framework also contains utilities such as an isotope calculator and a reference for residue abbreviations.
Updated 03 Oct 2011
openModeller
| Pop | 78.97 |
|---|---|
| Vit | 9.82 |
openModeller is a C++ framework providing tools and an API to model distribution patterns using a variety of algorithms. It can be used to predict species potential distribution based on a set of georeferenced occurrence points and a set of environmental layers.
