RSS 9 projects tagged "Bioinformatics"

Download Website Updated 29 Apr 2005 libmba

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Pop 188.07
Vit 4.64

The libmba package is a collection of mostly independent C modules potentially useful to any project. There are the usual ADTs including a linkedlist, hashmap, pool, stack, and varray, a flexible memory allocator, CSV parser, path canonicalization routine, I18N text abstraction, configuration file module, portable semaphores, condition variables, and more. The code is designed so that individual modules can be integrated into existing codebases rather than requiring the user to commit to the entire library. The code has no typedefs, few comments, and extensive man pages and HTML documentation.

Download No website Updated 31 Mar 2004 jgram

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Pop 19.18
Vit 1.00

jgram is a simple markov-chain library suitable for building rudimentary n-gram representations of sequences of any Java objects. It has an extensible scoring mechanism and a generator for traversing a random path through n-gram states based on transition score.

Download No website Updated 01 Nov 2004 AntFlow

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Pop 56.44
Vit 1.00

AntFlow builds upon Apache Ant to provide a new approach to simplifying system automation that uses pipelines of hot folders chained together to perform a given task. Using XML, it associates an automated task such as data transfer, encryption, or XML processing with a directory on the local system. Whenever a file is copied or written into the hot folder, the associated task is executed and the file is moved to the next hot folder in the pipeline for further processing.

Download Website Updated 12 Sep 2008 Redet

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Pop 226.22
Vit 11.02

Redet is a tool for developing and executing regular expressions using any of more than 50 search programs, editors, and programming languages, intended both for developing regular expressions for use elsewhere and as a search tool in its own right. For each program in each locale, a palette showing the available constructs is provided. The properties of each program are determined by runtime tests, which guarantees that they will be correct for the program version and locale. Additional features include persistent history, extensive help, a variety of character entry tools, and the ability to change locale while running. Redet is highly configurable and fully supports Unicode.

Download Website Updated 29 Jan 2005 ProteomeCommons.org IO Framework

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Pop 21.35
Vit 1.42

ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.

Download Website Updated 15 Mar 2006 Sentensa

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Pop 44.36
Vit 1.77

SENTENSA Knowledge Miner is a platform independent tool for searching any text. SENTENSA uses robust methods of indexing and searching text, leveraging experience from more than 20 years of information retrieval. SENTENSA products offer advanced text retrieval solutions for large databases that will make your searches for key information fast and effective. You can index on one platform and query on another.

No download Website Updated 06 Sep 2012 VTD-XML

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Pop 96.66
Vit 10.13

Virtual Token Descriptor for eXtensible Markup Language (VTD-XML) refers to a collection of efficient XML processing technologies centered around a non-extractive XML parsing technique called Virtual Token Descriptor (VTD). Depending on the perspective, VTD-XML can be viewed as either an XML parser, a native XML indexer or a file format that uses binary data to enhance the text XML, an incremental XML content modifier, an XML slicer/splitter/assembler, or an XML editor/eraser.

Download Website Updated 03 Feb 2007 Bioclipse

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Pop 45.08
Vit 2.77

Bioclipse is a rich-client platform chemistry and biology workbench. It provides access to many open source bioinformatics and chemoinformatics toolkits and has plugins for the Chemistry Development Kit, JChemPaint, Jmol, and BioJava.

Download Website Updated 28 Jul 2012 NCBI C++ Toolkit

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Pop 48.66
Vit 5.05

The NCBI C++ Toolkit provides portable libraries and applications for assisting genetic science. These include libraries for networking, SQL and BerkeleyDB access, CGI and HTML handling, ASN.1 and XML handling, sequence alignment engines, sequence retrieval engines, BLAST database engines, FLTK and OpenGL graphics toolkits, and basic system utilities.

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