174 projects tagged "Bioinformatics"
Updated 27 Sep 2009
Bioperl
| Pop | 88.78 |
|---|---|
| Vit | 8.69 |
Bioperl is set of Perl Modules for bioinformatics. It contains objects for Sequences, features on Sequences, and other important bioinformatics attributes.
Updated 30 Jan 2001
Clarrhmos
| Pop | 32.54 |
|---|---|
| Vit | 1.00 |
Clarrhmos is a description language and simulator for myocardial structure and electrophysiology. Input to the program is a model file specifying types of cells, action potential shape, refractory period, 3D placement of the cells, relation of parameters to other functions, pacing, electrode placement. Output is a file describing depolarisation and repolarisation of the myocardium and electrograms. A graphic tool for interactive inspection of the output file is also included.
Updated 26 Oct 2011
E-Cell System
| Pop | 150.83 |
|---|---|
| Vit | 15.34 |
E-Cell System is an object-oriented software suite for modelling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components, driven by multiple algorithms with different timescales, to coexist. The core library is written in C++ with a Python binding, and frontend software uses Python.
Updated 15 Aug 2001
Ensembl
| Pop | 21.45 |
|---|---|
| Vit | 1.84 |
Ensembl is an open source project to create and automatically maintain annotations on DNA sequence.
Updated 06 Jun 2001
Genpak
| Pop | 38.96 |
|---|---|
| Vit | 2.97 |
Genpak is a small set of utilities designated to process DNA, RNA, and protein sequences in a very Un*x-like manner. This way, Genpak programs can be combined using pipes and redirections, as well as easily incorporated into CGI scripts. The utilities include a program for calculating GC content, Tm, translating DNA/RNA sequences into protein sequences, quick sequence retrieval, random sequence generation, and finding promoter sequences using a Hertz matrix.
Updated 22 Sep 2006
JChemPaint
| Pop | 176.91 |
|---|---|
| Vit | 9.41 |
JChemPaint is a program for drawing 2D chemical structures like those found in most chemistry textbooks.
Updated 30 Jan 2001
Mavric
| Pop | 14.56 |
|---|---|
| Vit | 1.00 |
Mavric is a python module/application that aims to be a user-friendly tool for manipulating phylogenetic trees on *NIX-like systems running X Windows. As such, it complements other phylogeny programs that currently lack a nice graphical interface.
Updated 28 Oct 2011
NAMD
| Pop | 66.33 |
|---|---|
| Vit | 11.42 |
NAMD is a parallel, object-oriented molecular dynamics program designed for high-performance simulation of large biomolecular systems.
Updated 30 Sep 2003
Open Infrastructure for Outcomes
| Pop | 91.85 |
|---|---|
| Vit | 3.24 |
OIO is a Web-based metadata/data management front-end which is built using Zope and works with Postgresql. No programming is required to build and manage Web-forms or to perform data mining/analysis on the collected data. It is in production at the Harbor/UCLA Medical Center for clinical outcomes management and research data. Forms created with OIO and hosted on any OIO server can be downloaded as XML files. Once downloaded from the "Forms library" and imported into an OIO server, the necessary database tables are automatically recreated and the imported forms become immediately available to the users of that OIO server.
Updated 06 Jun 2001
Arka
| Pop | 14.56 |
|---|---|
| Vit | 3.20 |
Arka provides a nice GUI for the gp package of command-line utilities for manipulation and display of DNA/RNA/protein sequences, the WU-BLAST and FASTA program families, and additional graphical tools for various aspects of sequence analysis (e.g., GC plots and 3D graphs). It provides editable and saveable windows for standard input, output and error, and a dialog for any command-line program with specifications in a configuration file.
