225 projects tagged "Bioinformatics"

Updated 07 May 2013 Orthanc

P_op	114.54
V_it	12.55

Orthanc is a lightweight, RESTful DICOM server for health care and medical research.

Updated 01 May 2013 MetaPath

P_op	68.22
V_it	2.05

MetaPath is a tool for the analysis of metabolic pathways and associated visualization of experimental data. Built on the MetaCyc database, it provides an interactive map in which multiple pathways can be simultaneously visualized. Multiple annotations from the MetaCyc database are available, including synonyms, associated reactions and pathways, and database unification links. Metabolomics change data can be imported via simple CSV formats for visualization on targeted pathways. Pathways can be mined and removed algorithmically to identify key regulated pathways within a given dataset, providing a simper route to metabolic functions.

Updated 30 Apr 2013 Wandora

P_op	254.61
V_it	46.30

Wandora is a general purpose data extraction, management, and publishing application based on Topic Maps and Java. Wandora has a graphical user interface, layered presentation of knowledge, several data storage options, rich data extraction, import and export capabilities, and an embedded HTTP server that enables dynamic publication of Topic Maps. Wandora is well suited for rapid ontology construction and knowledge mashups.

Updated 17 Mar 2013 SHOGUN

P_op	295.54
V_it	31.65

SHOGUN is a machine learning toolbox whose focus is on large scale kernel methods and especially on Support Vector Machines (SVM). It provides a generic SVM object interfacing to several different SVM implementations, all making use of the same underlying, efficient kernel implementations. Apart from SVMs and regression, SHOGUN also features a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons, and algorithms to train hidden Markov models. SHOGUN can be used from within C++, Matlab, R, Octave, and Python.

Updated 27 Jan 2013 SimThyr

P_op	46.69
V_it	3.12

SimThyr is a continuous simulation program for pituitary-thyroid feedback control. Applications of this program cover research, including development of hypotheses, and education of students in biology and medicine, nurses, and patients.

Updated 26 Dec 2012 massXpert mass spectrometry package

P_op	143.74
V_it	27.77

The massXpert software package is a mass spectrometry environment for linear (bio-)polymers. It inherits all the innovations of GNU polyxmass. It allows the detailed definition of new polymer chemistries in the XpertDef module. These chemistry definitions are then used in the desktop calculator-like mass calculator (XpertCalc) and in the sophisticated polymer sequence editor and (bio-)chemical/mass spectrometric simulations module (XpertEdit). Available simulations include polymer and monomer chemical modifications, polymer sequence cleavage, gas-phase fragmentation, m/z ratio calculations, and more.

Updated 18 Nov 2012 codonPhyML

P_op	18.55
V_it	13.66

codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, it will return the phylogenetic tree which best describes their evolutionary relationship.

Updated 28 Oct 2012 Bone Age

P_op	51.23
V_it	11.73

Bone Age is a tool for radiologists, endocrinologists, and orthopaedic surgeons. It helps in the assessment and monitoring of skeletal age using the standards of Greulich and Pyle (2nd ed. Stanford, CA, 1959).

Updated 28 Oct 2012 CF Score

P_op	38.30
V_it	10.35

CF Score is a tool for radiologists and respiratory physicians. It assists in the scoring and monitoring of chest radiographs of patients with cystic fibrosis, using the Brasfield method.

Updated 28 Oct 2012 Fetal Growth

P_op	41.76
V_it	10.33

Fetal Growth is a tool for professionals involved in pregnancy assessment for monitoring obstetric measurements over time.

225 projects tagged "Bioinformatics"

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