RSS 176 projects tagged "Bioinformatics"

Download Website Updated 23 Aug 2005 ADF MAGE-ML Tool

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Pop 13.53
Vit 1.42

The aim of ADF MAGE-ML Tool is to provide a module for converting ADF files (a tab delimited file representing microarray design layout) into MAGE-ML format, and for generating an ADF from an array design described in MAGE-ML format. The module is build upon the ADF specifications and using MAGE-Stk APIs (Java). MIAME-compliance checking, a logging system, and integration of LifeScience Identifier (LSID) specifications are key components of the module. The module can be used via the command line or a graphical user interface.

Download Website Updated 22 Jan 2008 Adun

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Pop 26.65
Vit 2.91

Adun is an extensible biomolecular simulation program that includes data management and analysis capabilities.

Download No website Updated 22 Dec 2003 Analyze ECGs

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Pop 33.47
Vit 1.75

Analyze ECGs is a graphical data analysis tool for use on analog input DAQ data, such as that of RTLab. It is useful for opening the '.nds' file format produced by RTLab's data acquisition program, DAQSystem (it can also open regular ASCII files). Aside from being a general-purpose multichannel analog data editing tool, it also contains custom features useful for analyzing cardiac data. However, it can be used for editing/viewing general-purpose data as well. Additionally, this program can convert '.nds' files to ASCII format data.

Download No website Updated 01 Nov 2004 AntFlow

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Pop 56.84
Vit 1.00

AntFlow builds upon Apache Ant to provide a new approach to simplifying system automation that uses pipelines of hot folders chained together to perform a given task. Using XML, it associates an automated task such as data transfer, encryption, or XML processing with a directory on the local system. Whenever a file is copied or written into the hot folder, the associated task is executed and the file is moved to the next hot folder in the pipeline for further processing.

Download Website Updated 06 Jun 2001 Arka

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Pop 14.04
Vit 3.20

Arka provides a nice GUI for the gp package of command-line utilities for manipulation and display of DNA/RNA/protein sequences, the WU-BLAST and FASTA program families, and additional graphical tools for various aspects of sequence analysis (e.g., GC plots and 3D graphs). It provides editable and saveable windows for standard input, output and error, and a dialog for any command-line program with specifications in a configuration file.

Download Website Updated 17 Oct 2004 Artemis

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Pop 19.52
Vit 2.00

Artemis is a DNA sequence viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation. It can read and write complete EMBL and GENBANK database entries or sequence in FASTA or raw format. Extra sequence features can be in EMBL, GENBANK, or GFF format.

No download Website Updated 23 May 2004 BLAST on CD

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Pop 17.38
Vit 1.00

BLAST on CD is a live CD distribution based on DNAlinux that runs the NCBI BLAST server. It does not require installation and comes with the SARS and smallpox genomes.

Download Website Updated 01 Mar 2008 Babase

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Pop 35.36
Vit 1.00

Babase is a baboon data management system. It is designed to facilitate the retrieval, storage, maintenance, and analysis of the following broad data categories: group membership, social status (dominance rank), life events, sexual cycle events (including progeny), sexual cycle day-to-day status, dyadic social interactions, focal animal samples, and multi-party social interactions. Integration of other data is supported. Babase is designed for Web access.

Download Website Updated 05 Mar 2012 Basic Local Alignment Search Tool

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Pop 76.60
Vit 9.55

BLAST is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. It uses a heuristic algorithm which seeks local as opposed to global alignments, and is therefore able to detect relationships among sequences which share only isolated regions of similarity. It can be run locally as a full executable, and can be used to run BLAST searches against private, local databases, or downloaded copies of the NCBI databases. It runs on Mac OS, Win32, LINUX, Solaris, IBM AIX, SGI, Compaq OSF, and HP- UX systems.

No download Website Updated 23 Feb 2011 Berkeley DB XML

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Pop 124.16
Vit 3.12

Berkeley DB XML is a native XML database engine for use within your product. Made available as a C++ library with language bindings for Java, Perl, Python, PHP, and Tcl, it integrates directly into your application (it is not a standalone database server). It provides XQuery access into a database of document containers. XML documents are stored and indexed in their native format using Berkeley DB as the transactional database engine.

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Capstone

A lightweight multi-arch, multi-platform disassembly framework.

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gslapt

A GTK version of slapt-get.