RSS 20 projects tagged "Bioinformatics"

Download Website Updated 07 Apr 2011 JHeatChart

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Pop 68.76
Vit 1.89

JHeatChart is a one class Java API for generating heat map charts that was created because very few charting APIs seem to contain the facility to create heat maps. It is not a full featured charting API and cannot be used to other charts. The generated charts are created as Java Image objects, which can be incorporated into a GUI or saved to a file.

Download Website Updated 04 Feb 2007 chemical-mime-data

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Pop 13.45
Vit 1.42

The chemical-mime-data package is a collection of data files to add support for various chemical MIME types on Linux/Unix desktops, such as KDE and GNOME. Chemical MIME types were proposed in 1995, though it seems they have never been registered with IANA. But they are widely used, and the project's aim is to support these important but unofficial MIME types. Initial data was taken from "The Chemical MIME Home Page" of Henry Rzepa.

Download Website Updated 21 Dec 2006 QuteMol

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Pop 31.84
Vit 2.03

QuteMol is an interactive, high-quality molecular visualization system. QuteMol exploits the capabilites of current GPUs through OpenGL shaders to offer an array of innovative visual effects. QuteMol visualization techniques are aimed at improving clarity and an easier understanding of the 3D shape and structure of large molecules or complex proteins.

No download Website Updated 20 Jun 2006 JColorGrid

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Pop 26.83
Vit 1.75

JColorGrid is an application for graphical data exploration and the rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.

Download Website Updated 28 Oct 2011 BALLView

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Pop 62.72
Vit 6.69

BALLView is an extensible viewer for bio-molecular structures. It provides all standard models and offers rich functionality for molecular modeling and simulation, including molecular mechanics methods (AMBER, CHARMM, and MMFF94 force fields), continuum electrostatics methods employing a Finite-Difference Poisson Boltzmann solver, secondary structure calculation, molecular editing and docking. Since BALLView is based on BALL (the Biochemical ALgorithms Library), it is easily extensible on the level of C++ code. In addition, it provides a Python interface with Integrated Development Environment features to allow interactive rapid prototyping.

No download Website Updated 20 Jun 2009 LSystems in PostScript

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Pop 11.40
Vit 56.73

LSystems in PostScript is an L-system implemented entirely in the PostScript language. It can serve as an introduction to PostScript programming for nerds who are familiar with LSystems or as an introduction to L-systems for PostScript programers.

Download Website Updated 27 Oct 2005 JFDraw

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Pop 115.30
Vit 3.99

JFDraw is a Java vector graphics drawing application and library package. It is focused on vector graph drawing field. It is useful for mechanical, electronic, architectural graph drawing applications, or even business process or workflow graphs.

Download Website Updated 31 Jan 2004 Brook for GPUs

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Pop 53.17
Vit 1.00

Brook for GPUs is a compiler and runtime implementation of the Brook stream programming language for modern graphics hardware. The goals for this project are to demonstrate general purpose programing on GPUs, to provide a useful tool for developers who want to run applications on GPUs, and to research the stream language programming model, streaming applications, and system implementations.

Download Website Updated 06 Apr 2011 Raster3D

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Pop 53.83
Vit 3.72

Raster3D is a set of powerful tools for generating high quality raster images of proteins or other molecules. The core program renders spheres, triangles, cylinders, and quadric surfaces with specular highlighting, Phong shading, and shadowing. It uses an efficient software Z-buffer algorithm that is independent of any graphics hardware.

Download Website Updated 24 Oct 2003 The VolPack Volume Rendering Library

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Pop 41.86
Vit 1.00

VolPack is a portable software library for volume rendering, based on a new family of extremely fast volume rendering algorithms. The library does not use any specialized hardware and is therefore portable to most platforms, yet it achieves very fast rendering times.

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