The Noble Ape Simulation is a collection of a number of autonomous simulation components including a landscape simulation, biological simulation, weather simulation, sentient creature (Noble Ape) simulation, and a simple intelligent-agent scripting language (ApeScript). Noble Ape also contains a social simulation where the Noble Apes can be tracked in terms of social groups and also over many generations to explain social phenomenon to users looking to study this kind of interaction. It has been in development for more than a fifteen years.
SIP provides image processing, pattern recognition, and computer vision routines for SciLab, a Matlab-like matrix-oriented programming environment. SIP is able to read/write images in almost 90 major formats, including JPEG, PNG, BMP, GIF, FITS, and TIFF. It includes routines for filtering, segmentation, edge detection, morphology, curvature, fractal dimension, distance transforms, multiscale skeletons, and more.
Wandora is a general purpose data extraction, management, and publishing application based on Topic Maps and Java. Wandora has a graphical user interface, layered presentation of knowledge, several data storage options, rich data extraction, import and export capabilities, and an embedded HTTP server that enables dynamic publication of Topic Maps. Wandora is well suited for rapid ontology construction and knowledge mashups.
dbacl is a digramic Bayesian text classifier. Given some text, it calculates the posterior probabilities that the input resembles one of any number of previously learned document collections. It can be used to sort incoming email into arbitrary categories such as spam, work, and play, or simply to distinguish an English text from a French text. It fully supports international character sets, and uses sophisticated statistical models based on the Maximum Entropy Principle.
BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.