PathVisio is a bioinformatics tool that lets you do everything with biological pathway diagrams. PathVisio helps you organize biological information and lets you present or publish that information easily. You can create and draw pathways, export them to many image formats, annotate them with links to online biological databases such as Ensembl, Entrez or HMDB, and add comments and literature references from pubmed. PathVisio also lets you sort through high-throughput experimental data in pathway context. This is a much more pleasant way to present data than just a large table. You can import microarray, proteomics or metabolomics data. PathVisio has a plugin interface that lets users customize it to new analysis types, new visualization methods, and new pathway formats. PathVisio is compatible with WikiPathways.
Pax Exam is a tool to ease testing OSGi frameworks and applications. It provides a simple to set up integration test framework for OSGi. You can safely run your tests on a local OSGi framework. It has dozens of supported OSGi framework configurations. You can execute and debug a chunk of code inside your OSGi-based application.
The Pegasus Workflow Management System encompasses a set of technologies which help workflow-based applications execute in a number of different environments, including desktops, campus clusters, grids, and clouds. It bridges the scientific domain and the execution environment by automatically mapping high-level workflow descriptions onto distributed resources. It automatically locates the necessary input data and computational resources necessary for workflow execution. It enables scientists to construct workflows in abstract terms without worrying about the details of the underlying execution environment or the particulars of the low-level specifications required by the middleware (Condor, Globus, or Amazon EC2). It bridges the current cyberinfrastructure by effectively coordinating multiple distributed resources.
Peludo is a system that provides a toolchain and a runtime to create and launch self-contained, platform independent, injectable, network transportable, non-static applications that can be dynamically extended on-demand. From a security assessment perspective, it could be seen as a tool to create advanced payloads: entire libraries and multithreading programs can be deployed over the network without touching the target file system.
Piggydb is a flexible and scalable knowledge building platform that supports a heuristic or bottom-up approach to discover new concepts or ideas based on your input. You can begin with using it as a flexible outliner, diary or notebook, and as your database grows, Piggydb helps you to shape or elaborate your own knowledge. Piggydb is a Web application provided as a self-contained package that contains a Web server and database engine.
PirateWall is a simple Twitter Client. It displays search results for a certain keyword or hashtag in realtime in a shell-based environment. It can also be configured to act as a data provider for many different visualization tools. For example, it is possible to use the client as a text generator for many XScreensaver applications like "apple2" or "starwars". When used in a Unix shell environment, colorized output can be generated.